Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0836
(700 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 31 0.12
SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces p... 30 0.37
SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|c... 28 1.1
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 27 2.6
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce... 27 2.6
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ... 27 3.4
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc... 26 4.5
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 26 4.5
SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi... 26 4.5
SPAC23A1.18c |mrp51||mitochondrial ribosomal protein subunit L51... 26 6.0
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb... 26 6.0
SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual 25 7.9
SPBC409.05 |skp1|psh1, sph1|SCF ubiquitin ligase complex subunit... 25 7.9
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc... 25 7.9
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 31.5 bits (68), Expect = 0.12
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Frame = +1
Query: 358 NNEPNAKRQRLDSSELSSNSTIEGTRVYVLPNGSVPCNKP----LSDLIHLVKPHIRELV 525
NN PN + RL + S+S + T+ + P S P P ++ +L++ R ++
Sbjct: 54 NNHPNGPQLRLQTHFFHSSSPMHATKGFRFPKSSTPLTLPAVLSVASFANLLQIPTRRIL 113
Query: 526 EDSNLL 543
D N L
Sbjct: 114 RDLNRL 119
>SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 473
Score = 29.9 bits (64), Expect = 0.37
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Frame = +1
Query: 343 PPATSNNEPNAKRQRLDSSELSSNSTIEGTRVYVLPNGSVPCNKPL--SDLIHLVKPHIR 516
PP++ P Q+ ++ SS S T + LP+G VP N+P+ + + L+K IR
Sbjct: 349 PPSSIQIPPPKPMQKFPANAASSESPPNATGNF-LPSGPVPANEPMLKRESVDLIK--IR 405
Query: 517 EL 522
+L
Sbjct: 406 QL 407
>SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 547
Score = 28.3 bits (60), Expect = 1.1
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Frame = +1
Query: 289 QNRNLSDVHQDLNIPIPTPPATSNNEPNAKRQRLDSSELSSNSTIEGTRVYV-LPNGSVP 465
Q+ ++S H L+IP+P P SNN N ++ SS S +++ + R + N +
Sbjct: 61 QDSSISFTHDPLHIPLPNP---SNNNDNIFHPQVHSSFHSRSASRQRRRSGLSRSNATRY 117
Query: 466 CNKPLSDLIHLVK 504
+ LSD + ++
Sbjct: 118 SRRSLSDWLETIR 130
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 27.1 bits (57), Expect = 2.6
Identities = 13/51 (25%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +1
Query: 208 LKAEHLIIKGFPEKIVKLNELLETS-NFQNRNLSDVHQDLNIPIPTPPATS 357
+K E + + P++ + E ++TS + N+S + + ++P+PT AT+
Sbjct: 524 IKEEEAVSENAPQQEERSFEQIKTSIHIAPENISAIEESKSVPLPTSFATT 574
>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1151
Score = 27.1 bits (57), Expect = 2.6
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +1
Query: 346 PATSNNEPNAKRQRLDSSELS 408
P S+N PN KR+R SSE S
Sbjct: 490 PTRSDNPPNEKRRRTSSSENS 510
>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 932
Score = 26.6 bits (56), Expect = 3.4
Identities = 12/45 (26%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +1
Query: 313 HQDLNIPIPTPPATSNNEPNAKRQRL-DSSELSSNSTIEGTRVYV 444
H D + IP+P ++ + + QRL S+++ + +E +VY+
Sbjct: 546 HPDDKLMIPSPKIVTHGDAMQEEQRLRQKSQITPDDEVELAKVYL 590
>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1233
Score = 26.2 bits (55), Expect = 4.5
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
Frame = +1
Query: 469 NKPLSDL----IHLVKPHIRELVEDSNLLKMW 552
N+ L DL IHLVKP++ E N LK W
Sbjct: 1072 NQELLDLLLFSIHLVKPNVETNDEVCNTLKAW 1103
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 26.2 bits (55), Expect = 4.5
Identities = 13/59 (22%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = +1
Query: 241 PEKIVKLNELLE-TSNFQNRNLSDVHQDLNIPIPTPPATSNNEPNAKRQRLDSSELSSN 414
P +V+ N ++ T+ + + +D+H + + PP++ E N +L++ ++SS+
Sbjct: 390 PSFVVQNNSAVQPTTQKTSEDSTDLHTNEIPNVAQPPSSFEKENNKDTSKLENPDISSS 448
>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 970
Score = 26.2 bits (55), Expect = 4.5
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 442 VLPNGSVPCNKPLSDLIHLVKPH 510
VLPNG+ ++D+ H VKP+
Sbjct: 523 VLPNGNYEVGVHIADVTHFVKPN 545
>SPAC23A1.18c |mrp51||mitochondrial ribosomal protein subunit L51-b
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 291
Score = 25.8 bits (54), Expect = 6.0
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +1
Query: 274 ETSNFQNRNLSDVHQDLNIPIPTPPATSNNEPNAK--RQRLDSSELSSNST 420
E NF+ +S Q N+P+ T N E N R+RL + +SS+++
Sbjct: 120 ENDNFRRYGVSGGIQYSNVPLINSRVTPNCESNCSNIRRRLTAHIISSDAS 170
>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 952
Score = 25.8 bits (54), Expect = 6.0
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Frame = +1
Query: 178 QVQDYKDSLKLKAEHLI--IKGFPEKIVKLNELLETSNFQNRNLSDVHQDLNIPIPTPPA 351
++Q LKL+ E L IK E+ L E LET +NL +++ + +
Sbjct: 319 EIQTQNRDLKLETEKLQDQIKALLERNQSLQEALETVKNDEKNLREMNANYETEMKEARQ 378
Query: 352 TSNNE 366
NN+
Sbjct: 379 KLNNK 383
>SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
Length = 421
Score = 25.4 bits (53), Expect = 7.9
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +3
Query: 153 RHNWLVCISGPRLQRF 200
+HN++VC SGP L F
Sbjct: 19 KHNYIVCCSGPYLLGF 34
>SPBC409.05 |skp1|psh1, sph1|SCF ubiquitin ligase complex subunit
Skp1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 161
Score = 25.4 bits (53), Expect = 7.9
Identities = 15/58 (25%), Positives = 29/58 (50%)
Frame = +1
Query: 259 LNELLETSNFQNRNLSDVHQDLNIPIPTPPATSNNEPNAKRQRLDSSELSSNSTIEGT 432
+++L+ + +N+ + ++N+PIP P +S N R+ L+ E N GT
Sbjct: 16 VDQLIAERSMLIKNMLEDVGEINVPIPLPNVSS----NVLRKVLEWCEHHKNDLYSGT 69
>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 997
Score = 25.4 bits (53), Expect = 7.9
Identities = 22/87 (25%), Positives = 40/87 (45%)
Frame = +1
Query: 241 PEKIVKLNELLETSNFQNRNLSDVHQDLNIPIPTPPATSNNEPNAKRQRLDSSELSSNST 420
PEK K E+L++ N + D H+ + + T +++ + + E N +
Sbjct: 535 PEKKRKFQEVLQSKNILVSSTEDSHEPVKV-------TEDSQTAIHVSKFEDLE---NKS 584
Query: 421 IEGTRVYVLPNGSVPCNKPLSDLIHLV 501
+E + L + S +KPL DLI L+
Sbjct: 585 MESEQSLQLLSESENDDKPLIDLIPLL 611
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,937,118
Number of Sequences: 5004
Number of extensions: 62628
Number of successful extensions: 216
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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