Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0836
(700 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0660 + 5029070-5029177,5029303-5029398,5029494-5029556,502... 31 1.2
08_01_0510 + 4455805-4456637,4457837-4457912 30 1.5
09_04_0007 - 13641012-13641431,13642220-13642312,13642429-136425... 30 2.0
03_05_0967 + 29265465-29266214,29267718-29267944,29268428-292685... 30 2.0
07_03_0435 + 18182657-18183509,18184477-18184574,18184663-181848... 29 2.7
06_01_0418 - 2979418-2981404,2984505-2986469,2987164-2988053 29 3.5
04_04_1030 - 30249160-30250403,30250787-30251666 29 3.5
01_06_0356 + 28662956-28664043,28664255-28665139,28665227-286658... 29 3.5
09_04_0652 - 19227686-19227926,19229368-19232294 29 4.7
09_04_0560 - 18519024-18519145,18519330-18519435,18519671-185199... 29 4.7
02_05_0425 - 28845707-28846189,28846262-28846403,28846496-288469... 29 4.7
05_01_0035 - 232656-232781,233212-233322,233419-233563,233749-23... 28 6.2
03_03_0188 + 15269347-15270213 28 8.2
>01_01_0660 +
5029070-5029177,5029303-5029398,5029494-5029556,
5029836-5029913,5030446-5030614,5030797-5031180,
5031959-5032042,5032143-5032288,5032810-5033070,
5033147-5033328,5033421-5033586,5033650-5033703,
5034702-5034965,5035088-5035303,5035388-5035540,
5035630-5035827
Length = 873
Score = 30.7 bits (66), Expect = 1.2
Identities = 18/60 (30%), Positives = 32/60 (53%)
Frame = +1
Query: 334 IPTPPATSNNEPNAKRQRLDSSELSSNSTIEGTRVYVLPNGSVPCNKPLSDLIHLVKPHI 513
+PT TSN+ + +++D++E + NS +E V LP + + + DL +KP I
Sbjct: 377 VPTEGVTSNHLDLPEERQVDATECALNSDLERGTV-DLPESTANISTKIPDLPSQLKPEI 435
>08_01_0510 + 4455805-4456637,4457837-4457912
Length = 302
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = +1
Query: 193 KDSLKLKAEHLIIKGFPEKIVKLNELLETSNFQNRNLSDVHQDLNIPI 336
K S L+ E+ +KG ++I L + L N R L+DV +DL+ P+
Sbjct: 19 KLSKLLEDEYAKLKGVQQQIAFLRDELRAMNATLRVLADVEEDLDPPV 66
>09_04_0007 -
13641012-13641431,13642220-13642312,13642429-13642521,
13642607-13642671,13643495-13643565,13643644-13643682,
13644709-13645121
Length = 397
Score = 29.9 bits (64), Expect = 2.0
Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Frame = +1
Query: 196 DSLKLK-AEHLIIKGFPEKIVKLNELLETSNFQNRNLSDVHQDLNIPIPTPPATSNNEPN 372
++LK+K A+ L+ G P ++ NE+L S++ RNLS V + T A + +P
Sbjct: 288 EALKIKYADPLVYTG-PIRVRTGNEILRISSYLQRNLSRVTVPFLVLHGT--ADTITDPG 344
Query: 373 AKRQRLDSSELSSNSTIE 426
A QRL S S++ +I+
Sbjct: 345 AS-QRLYQSSASAHKSIK 361
>03_05_0967 + 29265465-29266214,29267718-29267944,29268428-29268557,
29268651-29268719,29268803-29268946,29269775-29270011,
29270897-29270998,29271131-29271396,29271766-29273410,
29274449-29275018
Length = 1379
Score = 29.9 bits (64), Expect = 2.0
Identities = 19/48 (39%), Positives = 23/48 (47%)
Frame = +1
Query: 274 ETSNFQNRNLSDVHQDLNIPIPTPPATSNNEPNAKRQRLDSSELSSNS 417
E +N QNR SDVH P + T +PN D + LSSNS
Sbjct: 1101 EENNMQNRGRSDVHPRDENPNNSERNTRQEKPNNTH---DGNRLSSNS 1145
>07_03_0435 +
18182657-18183509,18184477-18184574,18184663-18184833,
18185524-18185624,18185702-18185837,18186007-18186057,
18186202-18186489,18186610-18186844,18186924-18187204,
18187336-18187557
Length = 811
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +1
Query: 331 PIPTPPATSNNEPNAKRQRLDSSE 402
P P PPATS P A + LD+ E
Sbjct: 81 PPPPPPATSRRPPRAPERELDTEE 104
>06_01_0418 - 2979418-2981404,2984505-2986469,2987164-2988053
Length = 1613
Score = 29.1 bits (62), Expect = 3.5
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +1
Query: 397 SELSSNSTIEGTR-VYVLPNGSVPCNKPLSDLIHLVKPHIRELVEDSNLLKMWIS 558
SEL SN T+EGT+ V L +P + L + P +++ L++MWI+
Sbjct: 1081 SELESNPTLEGTKQVLTLSYNDLPYHLKACFLYLSIFPE-NHVIKRGPLVRMWIA 1134
>04_04_1030 - 30249160-30250403,30250787-30251666
Length = 707
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 571 KIEDGNNFRCFNTRGYTGRDTISRIRGS 654
++EDG +RC + GYTG I + GS
Sbjct: 269 EVEDGAGYRCNCSGGYTGNPYIGCVGGS 296
>01_06_0356 +
28662956-28664043,28664255-28665139,28665227-28665840,
28665929-28666338
Length = 998
Score = 29.1 bits (62), Expect = 3.5
Identities = 20/48 (41%), Positives = 25/48 (52%)
Frame = +1
Query: 265 ELLETSNFQNRNLSDVHQDLNIPIPTPPATSNNEPNAKRQRLDSSELS 408
EL +N Q LSD DL+ PIP NN PN R +L S+ L+
Sbjct: 161 ELANLNNLQILRLSD--NDLSGPIPQ--GLFNNTPNLSRIQLGSNRLT 204
Score = 27.9 bits (59), Expect = 8.2
Identities = 23/80 (28%), Positives = 36/80 (45%)
Frame = +1
Query: 265 ELLETSNFQNRNLSDVHQDLNIPIPTPPATSNNEPNAKRQRLDSSELSSNSTIEGTRVYV 444
++ +N Q NLS+ IP+ TS + N +L S S+ ++ +V V
Sbjct: 431 QITSMNNLQELNLSNNTLSGTIPVEITGLTSLVKLNLANNQLVSPIPSTIGSLNQLQVVV 490
Query: 445 LPNGSVPCNKPLSDLIHLVK 504
L S+ P+S L HL K
Sbjct: 491 LSQNSLSSTIPIS-LWHLQK 509
>09_04_0652 - 19227686-19227926,19229368-19232294
Length = 1055
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +1
Query: 307 DVHQDLNIPIPT--PPATSNNEPNAKRQRLDSSELSSN 414
D DL++P+P+ PPA S + P AKR + + + N
Sbjct: 367 DQFLDLSLPVPSRRPPAKSVSSPPAKRNKQSLRDRNKN 404
>09_04_0560 -
18519024-18519145,18519330-18519435,18519671-18519907,
18521371-18521810,18523215-18525012
Length = 900
Score = 28.7 bits (61), Expect = 4.7
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Frame = +1
Query: 391 DSSELSSNSTIEGTRVYVLPNGSVPCNKPLSDLIHLVKPHIREL--VEDSNLLKMWISFM 564
D +SS S + V LP+G PC K S LI V P E+ V L + ++
Sbjct: 295 DELYISSRSML--ATVLSLPSGLPPCIKSPSKLIEQVLPFAEEIVGVVMDELASLDMTVS 352
Query: 565 IPKIEDGNNF 594
+ED +NF
Sbjct: 353 SKNLEDLSNF 362
>02_05_0425 -
28845707-28846189,28846262-28846403,28846496-28846971,
28848817-28848848,28849429-28849572,28849770-28849841,
28850281-28850296
Length = 454
Score = 28.7 bits (61), Expect = 4.7
Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Frame = +1
Query: 232 KGFPEKIVKLNELLETSNFQNRNLSDVHQDLNIPIPTPPATSNN---EPNAKRQRLDSSE 402
+GF ++E ++ +F +R S + P PP S+ E R ++
Sbjct: 280 QGFSTPTSSVDEAMQRDSFYSRVGSTRESPAMMMPPPPPLPSSGAGREHPISRTASSKAQ 339
Query: 403 LSSNSTIEGTRVYVLPNGSVP 465
LSS+S++ R P+ +VP
Sbjct: 340 LSSSSSVAAARPPFYPSTAVP 360
>05_01_0035 -
232656-232781,233212-233322,233419-233563,233749-233882,
234341-234412,234485-234548,234632-234699,234894-235129,
236857-237166,237495-238460,238752-238931,239041-239346,
239593-239727,239810-240046,240120-240308,240521-240709,
240929-241024,241117-241323,241700-241893,242979-243216
Length = 1400
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +1
Query: 10 IMTDVAKKRE*SVTSRHNGSCKFRAKST*PQHAMVFCCIVQ 132
+ D+++ E S NG K+ A T P HA + C +V+
Sbjct: 555 LFIDISEHLELSSLPSSNGVLKYLAGKTLPSHAAILCGLVK 595
>03_03_0188 + 15269347-15270213
Length = 288
Score = 27.9 bits (59), Expect = 8.2
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +1
Query: 268 LLETSNFQNRNLSDVHQDLNIPIPTPPA-TSNNEPNAKRQR 387
LL TS+ + +S P P PPA TSNN+P KR R
Sbjct: 56 LLHTSSSSSATMSP--SQAPPPHPPPPAPTSNNKPPKKRPR 94
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,996,986
Number of Sequences: 37544
Number of extensions: 365357
Number of successful extensions: 1050
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1015
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1049
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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