Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0836
(700 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12612| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 8e-04
SB_40812| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.39
SB_30395| Best HMM Match : zf-C2H2 (HMM E-Value=1.6) 32 0.51
SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.68
SB_54230| Best HMM Match : EGF (HMM E-Value=0) 31 0.90
SB_31736| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_37663| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_6164| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_50702| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
>SB_12612| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 231
Score = 41.1 bits (92), Expect = 8e-04
Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 10/85 (11%)
Frame = +1
Query: 211 KAEHLIIKGFPEKIVKLNELLETSNFQNRNLSDVHQDLNIPIPTPPATSNN--------- 363
KAE ++ K FPE++ +L+ LL++ F + V D IPI P + +N
Sbjct: 5 KAEEVVTKFFPERVTELDNLLKSGMFALNKIPKVQADSIIPISHPNSDHSNDILLKKSFL 64
Query: 364 EPNAKRQRLDSSE-LSSNSTIEGTR 435
+P K+++L +SE + + ++G R
Sbjct: 65 QPQNKKRKLSNSEQIEKMAELDGIR 89
>SB_40812| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1168
Score = 32.3 bits (70), Expect = 0.39
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +1
Query: 307 DVHQDLNIPIPTPPATSNNEPNAKRQRLDSSELSSNSTIEGT-RVYVLPNGSVPCNKPL 480
++ + +N P PTPP++S E A++ LD L T++G + P GS P+
Sbjct: 726 NIDKVVNFPFPTPPSSSALE-TAEKLLLDLGALEERKTVKGNISAVISPLGSAMAKFPV 783
>SB_30395| Best HMM Match : zf-C2H2 (HMM E-Value=1.6)
Length = 755
Score = 31.9 bits (69), Expect = 0.51
Identities = 23/69 (33%), Positives = 36/69 (52%)
Frame = +1
Query: 313 HQDLNIPIPTPPATSNNEPNAKRQRLDSSELSSNSTIEGTRVYVLPNGSVPCNKPLSDLI 492
H++ N+ + AT NN+ A S E S+S+ E V V P G +P NK L++ +
Sbjct: 247 HEESNVKVRVEGATGNNDGPA------SQETISSSSSEKVSVSV-PLGCLPKNKTLNEDM 299
Query: 493 HLVKPHIRE 519
+ HI+E
Sbjct: 300 VDIMEHIQE 308
>SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3760
Score = 31.5 bits (68), Expect = 0.68
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Frame = +1
Query: 229 IKGFPEKIVKLNELLETSNFQNRNLSDVHQDLNIPIP---TPPATSNNEPNAKRQRL 390
I+ EK+ K NE +E +N LSD+ +LN I S+++PN K Q+L
Sbjct: 1947 IEEMREKMRKANEEIEKILSKNSKLSDILNELNSGIENILNEETLSDSDPNVKLQKL 2003
>SB_54230| Best HMM Match : EGF (HMM E-Value=0)
Length = 1359
Score = 31.1 bits (67), Expect = 0.90
Identities = 20/52 (38%), Positives = 30/52 (57%)
Frame = +1
Query: 337 PTPPATSNNEPNAKRQRLDSSELSSNSTIEGTRVYVLPNGSVPCNKPLSDLI 492
P P+TS N+P ++RQR SS+ S++S + LP G P +P S L+
Sbjct: 265 PLDPSTSPNKP-SRRQRFHSSD-STSSLGSPQESHALPTGQSP-TRPHSGLL 313
>SB_31736| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1095
Score = 29.5 bits (63), Expect = 2.7
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
Frame = +1
Query: 289 QNRNLSDVHQDLNIPIPTPPATSNNEPNAKRQRLD--SSELSSNSTIEGTRVYV---LPN 453
+ + +DVH +P PP S N+P + Q +D + T T++Y LP
Sbjct: 903 ETQRQTDVHDTQQQHLPPPPIPSPNQPVSTAQYIDQYGDDNDIRKTQRQTKMYTTQQLPP 962
Query: 454 GSVPC-NKPLS 483
+P N+P+S
Sbjct: 963 PPIPSPNQPVS 973
>SB_37663| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1735
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +1
Query: 283 NFQNRNLSDVHQDLNIPIPTPPATSNNEPNAKRQRLDSSELSSNSTIEGTR 435
++ N++ D H L+ P PTPP P K+ ++ L + E TR
Sbjct: 1384 HYTNKDPVDKHNPLHNPSPTPPTALLISPLTKQAQMTRGFLETLDLNEDTR 1434
>SB_6164| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 465
Score = 28.7 bits (61), Expect = 4.8
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 4/92 (4%)
Frame = +1
Query: 169 CVFQVQDYK-DSLKLKAEHLIIKGFPEKIVKLNELLETSNFQNRNLSDVHQDLN---IPI 336
CVF++Q S LK + K + K E+ ET Q+ +L D+ +++ I
Sbjct: 323 CVFELQSLNIASNGLKLHRVFNKNSTNWLEKF-EVNETRKIQHISLGDLCNNISGSIIKN 381
Query: 337 PTPPATSNNEPNAKRQRLDSSELSSNSTIEGT 432
+NN N R+ + + S N+TI T
Sbjct: 382 KNNSRINNNSSNNNRRNISRNNNSINNTITAT 413
>SB_50702| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 823
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +1
Query: 385 RLDSSELSSNSTIEGTRVYVLPNGSVPCNKPLSDLI 492
R+DS + N+ I+ T P+GS KP+ D +
Sbjct: 637 RVDSLGPTENNKIQATYTVTFPSGSAATLKPIDDAV 672
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,179,410
Number of Sequences: 59808
Number of extensions: 425505
Number of successful extensions: 1241
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1241
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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