Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0836
         (700 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.            24   5.3  
AY347946-1|AAR28374.1|  640|Anopheles gambiae putative NPY GPCR ...    23   7.0  
AF080566-1|AAC31946.1|  308|Anopheles gambiae abdominal-A homeot...    23   7.0  
CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative cytoskel...    23   9.2  

>AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.
          Length = 1356

 Score = 23.8 bits (49), Expect = 5.3
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 580 DGNNFRCFNTRGYTGR 627
           DGNNFR  ++  + GR
Sbjct: 800 DGNNFRSLSSHAFLGR 815


>AY347946-1|AAR28374.1|  640|Anopheles gambiae putative NPY GPCR
           protein.
          Length = 640

 Score = 23.4 bits (48), Expect = 7.0
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = -1

Query: 328 CLNPDVRP-INSDFESLMSLVIHXXXXXXXXXXXXSNAPPLVSKNLCS 188
           C NP +   +N+ F S   LV+H             + PP +++N+ S
Sbjct: 561 CYNPIIYCYMNARFRSGFILVLHGVPGLQQLCCCIRHTPPAIARNVGS 608


>AF080566-1|AAC31946.1|  308|Anopheles gambiae abdominal-A homeotic
           protein protein.
          Length = 308

 Score = 23.4 bits (48), Expect = 7.0
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +3

Query: 153 RHNWLVCISGPRLQRFFET 209
           RH WLV  S   LQ+F  T
Sbjct: 97  RHPWLVTASQSALQKFAST 115


>CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative
           cytoskeletal structural protein protein.
          Length = 1645

 Score = 23.0 bits (47), Expect = 9.2
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 621 SVSSCIETPKIVPILNFR 568
           S  +CI++PK V +LN R
Sbjct: 871 SCVNCIKSPKAVSVLNSR 888


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 724,244
Number of Sequences: 2352
Number of extensions: 14353
Number of successful extensions: 25
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 71086350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)