Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0836
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL161712-6|CAC70141.1|  248|Caenorhabditis elegans Hypothetical ...   109   2e-24
U97550-1|AAK18983.2| 1065|Caenorhabditis elegans Hypothetical pr...    30   1.8  
U29244-10|AAC71091.2|  908|Caenorhabditis elegans Hypothetical p...    29   3.2  
Z77133-7|CAB00865.2|  735|Caenorhabditis elegans Hypothetical pr...    29   4.2  
U28738-7|AAA68312.1|  341|Caenorhabditis elegans Hypothetical pr...    29   4.2  
U28738-5|AAT92055.1|  342|Caenorhabditis elegans Hypothetical pr...    29   4.2  
U28409-2|AAN60501.1|  288|Caenorhabditis elegans Hypothetical pr...    29   4.2  
AL008868-4|CAO82021.1|  735|Caenorhabditis elegans Hypothetical ...    29   4.2  
AC084158-1|AAK68563.2| 1256|Caenorhabditis elegans Hypothetical ...    28   5.6  
U80437-15|AAB37627.1|  445|Caenorhabditis elegans Mus (drosophil...    28   7.4  
AC024806-3|AAP13749.1|  363|Caenorhabditis elegans Serpentine re...    28   7.4  
U50193-7|AAL11479.1|  327|Caenorhabditis elegans T box family pr...    27   9.8  
U41011-7|AAA82290.1|  271|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>AL161712-6|CAC70141.1|  248|Caenorhabditis elegans Hypothetical
           protein Y66D12A.9 protein.
          Length = 248

 Score =  109 bits (261), Expect = 2e-24
 Identities = 53/143 (37%), Positives = 89/143 (62%), Gaps = 4/143 (2%)
 Frame = +1

Query: 178 QVQDYKDSLKLKAEHLIIKGFPEKIVKLNELLETSNFQNRNLSDVHQDLNIPIPTPPA-- 351
           ++ +YK  L  +AE L+ + FP+K+++ + LL++       L+++  D ++ IP P A  
Sbjct: 12  ELVEYKQKLFAEAERLVKEEFPKKVIEFDALLKSPKLSYDRLAEILPDKSLNIPIPDALN 71

Query: 352 --TSNNEPNAKRQRLDSSELSSNSTIEGTRVYVLPNGSVPCNKPLSDLIHLVKPHIRELV 525
             T ++EP  KRQR+D          +G  ++   +G+VPCN+ L+ L+ LV+P +R+ V
Sbjct: 72  GTTDSDEPAVKRQRVDEKP-------KGAPIFAFSSGTVPCNENLAQLMDLVRPKLRDAV 124

Query: 526 EDSNLLKMWISFMIPKIEDGNNF 594
           E  N +KMWI+ +IP+IEDGNNF
Sbjct: 125 EQCNNVKMWITLLIPRIEDGNNF 147



 Score = 57.6 bits (133), Expect = 8e-09
 Identities = 25/43 (58%), Positives = 35/43 (81%)
 Frame = +2

Query: 572 KLRMGTIFGVSIQEDTLAEIQSVESEAAAFFDQISRYFISRAK 700
           ++  G  FGV IQE+TL+E+++VESEAA+F DQ+SRYF +R K
Sbjct: 140 RIEDGNNFGVGIQEETLSEVRNVESEAASFLDQMSRYFTTRGK 182


>U97550-1|AAK18983.2| 1065|Caenorhabditis elegans Hypothetical
           protein T20F7.5 protein.
          Length = 1065

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = +1

Query: 277 TSNFQNRNLSDVHQDLNIPIPTPPATSNNEPNAKRQRLDSSELSSNS 417
           T+N        +   +  P+PTPP T+ +E     +  D + L+ NS
Sbjct: 492 TANQTGSTDGTITSGIQSPVPTPPVTNEHESQRSSRLSDFTNLAGNS 538


>U29244-10|AAC71091.2|  908|Caenorhabditis elegans Hypothetical
           protein ZK1248.10 protein.
          Length = 908

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +1

Query: 256 KLNELLETSNFQNRNLSDVHQDLNIPIPTPPATSNNEPNAKRQRLDSSELSSNST 420
           K +  L+ S+   RN S V ++ + P P PP  S  +P  + Q L   E  + ++
Sbjct: 123 KSDSSLDISSLTGRNSSSVLEECSSPSPVPPPRS-PKPKKRTQFLTEEETDAETS 176


>Z77133-7|CAB00865.2|  735|Caenorhabditis elegans Hypothetical
           protein K03A11.1 protein.
          Length = 735

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 289 QNRNLSDVHQDLNIPIPTPPATSNNEPN 372
           QN N+S+VH  ++I  PT     NN  N
Sbjct: 124 QNMNISNVHNGVHISTPTENLAENNANN 151


>U28738-7|AAA68312.1|  341|Caenorhabditis elegans Hypothetical
           protein T28D9.3a protein.
          Length = 341

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +1

Query: 277 TSNFQNRNLSDVHQDLNIPIPTPPATSNNEPNAKRQRLDSSELSSNSTI 423
           T  F N +     Q L +P   PP T  N  + +R RLD+   S++S+I
Sbjct: 274 TDLFSNNSTESETQPLLLP--RPPRTPRNSEDEERHRLDAVLPSTDSSI 320


>U28738-5|AAT92055.1|  342|Caenorhabditis elegans Hypothetical
           protein T28D9.3b protein.
          Length = 342

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +1

Query: 277 TSNFQNRNLSDVHQDLNIPIPTPPATSNNEPNAKRQRLDSSELSSNSTI 423
           T  F N +     Q L +P   PP T  N  + +R RLD+   S++S+I
Sbjct: 275 TDLFSNNSTESETQPLLLP--RPPRTPRNSEDEERHRLDAVLPSTDSSI 321


>U28409-2|AAN60501.1|  288|Caenorhabditis elegans Hypothetical
           protein T25D10.5 protein.
          Length = 288

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -3

Query: 404 NSDESSL*RLAFGSLFDV-AGGVGIGMFKS*CTSDKFRF 291
           NSD+ S+ +   G   D   GG+ + +F S  TS+K+RF
Sbjct: 9   NSDKYSI-KSVLGKFCDTNCGGINVSLFVSETTSNKYRF 46


>AL008868-4|CAO82021.1|  735|Caenorhabditis elegans Hypothetical
           protein K03A11.1 protein.
          Length = 735

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 289 QNRNLSDVHQDLNIPIPTPPATSNNEPN 372
           QN N+S+VH  ++I  PT     NN  N
Sbjct: 124 QNMNISNVHNGVHISTPTENLAENNANN 151


>AC084158-1|AAK68563.2| 1256|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.19 protein.
          Length = 1256

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -3

Query: 566 IINEIHILSKFESSTSSLMCGLTRCIRSL 480
           ++NEI +LS   +  SS+M  L +C R+L
Sbjct: 421 LVNEISLLSSDSAEMSSVMAELDKCSRTL 449


>U80437-15|AAB37627.1|  445|Caenorhabditis elegans Mus (drosophila
           mutagen sensitive)related protein 81, isoform a protein.
          Length = 445

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = -2

Query: 666 SKKAAASDSTDCISASVSSC--IETPKIVPILNFRNHK*NPHFE 541
           S  +++S+S+D +S  + +C   E P +  I + R H+ NP F+
Sbjct: 182 STSSSSSNSSDPLSFRLLTCRPFEQPTVYLIADNREHRNNPRFK 225


>AC024806-3|AAP13749.1|  363|Caenorhabditis elegans Serpentine
           receptor, class w protein40 protein.
          Length = 363

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = +2

Query: 470 TSHSVILYILLSHTLGNLLKIQTY 541
           TSHS++L  +LS ++ NLLKI  +
Sbjct: 112 TSHSMLLLAVLSSSIRNLLKISMW 135


>U50193-7|AAL11479.1|  327|Caenorhabditis elegans T box family
           protein 7 protein.
          Length = 327

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +1

Query: 295 RNLSDVHQ-DLNIPIPTPPATSNNEPNAKRQR 387
           RN+  V +  +N  I TPPA+ + EP  KR +
Sbjct: 237 RNIDTVRKRKMNQIISTPPASEDEEPEVKRTK 268


>U41011-7|AAA82290.1|  271|Caenorhabditis elegans Hypothetical
           protein D2024.2 protein.
          Length = 271

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +2

Query: 449 RMVQYPATSHSVILYILLSHTLGNLLKIQTYSK 547
           R+ ++P + H  I+  LL+HT G  L ++ + K
Sbjct: 237 RIEEFPNSGHYTIMTNLLNHTSGEYLAMEKFLK 269


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,040,420
Number of Sequences: 27780
Number of extensions: 341131
Number of successful extensions: 1022
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 982
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1020
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)