Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0836
(700 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g47080.1 68416.m05112 expressed protein 32 0.32
At1g43700.1 68414.m05020 VirE2-interacting protein (VIP1) identi... 30 1.7
At2g46340.1 68415.m05768 phytochrome A supressor spa1 (SPA1) ide... 28 5.2
At5g63200.1 68418.m07935 tetratricopeptide repeat (TPR)-containi... 28 6.8
At1g65390.2 68414.m07419 disease resistance protein (TIR class),... 28 6.8
At1g65390.1 68414.m07420 disease resistance protein (TIR class),... 28 6.8
At1g65280.1 68414.m07402 DNAJ heat shock N-terminal domain-conta... 28 6.8
At1g30100.1 68414.m03679 9-cis-epoxycarotenoid dioxygenase, puta... 28 6.8
At5g58890.1 68418.m07378 MADS-box family protein various predict... 27 9.0
At3g48050.2 68416.m05239 bromo-adjacent homology (BAH) domain-co... 27 9.0
At3g48050.1 68416.m05238 bromo-adjacent homology (BAH) domain-co... 27 9.0
At3g09850.1 68416.m01175 D111/G-patch domain-containing protein ... 27 9.0
At1g53480.1 68414.m06062 expressed protein 27 9.0
>At3g47080.1 68416.m05112 expressed protein
Length = 515
Score = 32.3 bits (70), Expect = 0.32
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +1
Query: 325 NIPIPTPPATSNNEPNAKRQRLDSSELSSNSTIEGTR 435
N+PI P N P+ +QR+D S L ++ ++G++
Sbjct: 289 NLPIAASPPVVNKGPDQTQQRIDFSSLKESTKLDGSK 325
>At1g43700.1 68414.m05020 VirE2-interacting protein (VIP1) identical
to VirE2-interacting protein VIP1 GB:AAF37279 GI:7258340
from [Arabidopsis thaliana]
Length = 341
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +1
Query: 337 PTPPATSNNEPNAKRQRLDSSELSSNSTI 423
P PP S +P A +DS E SSN +
Sbjct: 66 PPPPQQSQQQPQASPMSVDSEETSSNGVV 94
>At2g46340.1 68415.m05768 phytochrome A supressor spa1 (SPA1)
identical to phytochrome A supressor spa1 (GI:4809171)
[Arabidopsis thaliana]; contains 8 WD-40 repeats (Pfam
PF00400) (1 weak)
Length = 1029
Score = 28.3 bits (60), Expect = 5.2
Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
Frame = +1
Query: 169 CVF-QVQDYKDSLKLKAEHLI-IKGFPEKIVKLNELLETSNFQNRNL-SDVHQDLNIPIP 339
C+F Q+ + DS K L+ ++ +V +L NF +L SDV +DLN P
Sbjct: 295 CLFRQLVELVDSAHSKRLFLLDLRPSLFTLVPSKKLRYIGNFGKNDLESDVDEDLNRRRP 354
Query: 340 TPPATSNNEPNAKRQRLDSSELSSNSTIEGT 432
+S+ ++K++++D S + ++ T
Sbjct: 355 VVEESSSGGRDSKKRKMDLHLNSPGNQLQAT 385
>At5g63200.1 68418.m07935 tetratricopeptide repeat (TPR)-containing
protein low similarity to SP|P28290 Sperm-specific
antigen 2 (Cleavage signal-1 protein) (CS-1) Homo
sapiens; contains Pfam profile PF00515: TPR Domain
Length = 649
Score = 27.9 bits (59), Expect = 6.8
Identities = 18/54 (33%), Positives = 29/54 (53%)
Frame = +1
Query: 187 DYKDSLKLKAEHLIIKGFPEKIVKLNELLETSNFQNRNLSDVHQDLNIPIPTPP 348
D +++ +K E + + P + +KL L + NF D+ D +IPIPTPP
Sbjct: 2 DRPETIAVKCEPMTVDS-PSRPLKLVVLADL-NFNPPETDDL--DSSIPIPTPP 51
>At1g65390.2 68414.m07419 disease resistance protein (TIR class),
putative domain signature TIR exists, suggestive of a
disease resistance protein.
Length = 297
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +1
Query: 232 KGFPEKIVKLNELLETSNFQNRNLSDVHQDLNIPIPTPPATSNNEPN 372
+ F + IVK + ++ + FQ RN +QD ++P T + PN
Sbjct: 173 RDFVKSIVKAVKKVQKNFFQRRNGEIEYQDFSVPACKLTITMHESPN 219
>At1g65390.1 68414.m07420 disease resistance protein (TIR class),
putative domain signature TIR exists, suggestive of a
disease resistance protein.
Length = 411
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +1
Query: 232 KGFPEKIVKLNELLETSNFQNRNLSDVHQDLNIPIPTPPATSNNEPN 372
+ F + IVK + ++ + FQ RN +QD ++P T + PN
Sbjct: 173 RDFVKSIVKAVKKVQKNFFQRRNGEIEYQDFSVPACKLTITMHESPN 219
>At1g65280.1 68414.m07402 DNAJ heat shock N-terminal
domain-containing protein contains Pfam profile PF00226
DnaJ domain
Length = 598
Score = 27.9 bits (59), Expect = 6.8
Identities = 17/56 (30%), Positives = 29/56 (51%)
Frame = +1
Query: 379 RQRLDSSELSSNSTIEGTRVYVLPNGSVPCNKPLSDLIHLVKPHIRELVEDSNLLK 546
++RL LS G RV++LP G+ P + LI + + + ++DS+ LK
Sbjct: 153 KKRLKKLFLSLKLKERGDRVFLLPPGASPSLDVVGHLIKGGEEDVEKSLDDSSPLK 208
>At1g30100.1 68414.m03679 9-cis-epoxycarotenoid dioxygenase,
putative / neoxanthin cleavage enzyme, putative /
carotenoid cleavage dioxygenase, putative similar to
9-cis-epoxycarotenoid dioxygenase GI:6715257 from
[Phaseolus vulgaris]
Length = 589
Score = 27.9 bits (59), Expect = 6.8
Identities = 17/63 (26%), Positives = 28/63 (44%)
Frame = +1
Query: 277 TSNFQNRNLSDVHQDLNIPIPTPPATSNNEPNAKRQRLDSSELSSNSTIEGTRVYVLPNG 456
T N NLS DL+ P P+ + N +R++L ++ +S + Y PN
Sbjct: 8 TPNPTKLNLSFAPSDLDAPSPSSSVSFTN-TKPRRRKLSANSVSDTPNLLNFPNYPSPNP 66
Query: 457 SVP 465
+P
Sbjct: 67 IIP 69
>At5g58890.1 68418.m07378 MADS-box family protein various predicted
proteins, Oryza sativa and Arabidopsis thaliana
Length = 294
Score = 27.5 bits (58), Expect = 9.0
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 7/59 (11%)
Frame = +1
Query: 496 LVKPHIRELVEDSNLLKMWI------SFMIPKIEDGNNFRCFNTRGYTGRD-TISRIRG 651
L+ PH ++ D NL++ W S M+ K DG F + Y R+ +SR G
Sbjct: 200 LISPHDGQIQMDPNLMEKWTDLALTQSLMMSKGNDGTQFMQRQEQPYYNREQVVSRSAG 258
>At3g48050.2 68416.m05239 bromo-adjacent homology (BAH)
domain-containing protein contains Pfam profile PF01426:
BAH domain
Length = 1613
Score = 27.5 bits (58), Expect = 9.0
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Frame = +1
Query: 346 PATSNNEPNAKRQRLDSSELSSNSTIEGTRVYVL-PNGSVPCNKPLSDLIHL 498
P TS N P A +DSS S + G +L P VP N P ++ L
Sbjct: 1477 PVTSANFPGASTAHMDSSS-SGRACFPGVNSQILGPGVPVPSNYPRPYIVGL 1527
>At3g48050.1 68416.m05238 bromo-adjacent homology (BAH)
domain-containing protein contains Pfam profile PF01426:
BAH domain
Length = 1613
Score = 27.5 bits (58), Expect = 9.0
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Frame = +1
Query: 346 PATSNNEPNAKRQRLDSSELSSNSTIEGTRVYVL-PNGSVPCNKPLSDLIHL 498
P TS N P A +DSS S + G +L P VP N P ++ L
Sbjct: 1477 PVTSANFPGASTAHMDSSS-SGRACFPGVNSQILGPGVPVPSNYPRPYIVGL 1527
>At3g09850.1 68416.m01175 D111/G-patch domain-containing protein
contains Pfam profile PF01585: G-patch domain
Length = 781
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +1
Query: 319 DLNIPIPTPPATSNNEPNAKRQRLDSS 399
D +I P +SNN NAKR R SS
Sbjct: 679 DFSIDTEDPSPSSNNNNNAKRNRSSSS 705
>At1g53480.1 68414.m06062 expressed protein
Length = 193
Score = 27.5 bits (58), Expect = 9.0
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +1
Query: 268 LLETSNFQNRNLSDVHQDLNIPIPTPPATSNNEPNAKRQRLD 393
+LET+ F N S + Q L IP PP+ N+ R+R +
Sbjct: 16 ILETNRFINLPDSRLTQTLEIPAAAPPSLWLNQRVLSRRRAE 57
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,967,677
Number of Sequences: 28952
Number of extensions: 313168
Number of successful extensions: 924
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 923
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -