Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0835
         (760 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces...   144   2e-35
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc...    27   3.8  
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac...    26   5.1  
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    26   6.7  
SPAC2F3.12c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   8.9  

>SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 208

 Score =  144 bits (348), Expect = 2e-35
 Identities = 83/192 (43%), Positives = 110/192 (57%), Gaps = 1/192 (0%)
 Frame = -3

Query: 662 RXWQXFVKXWFNQPAXXXXXXXXXXXXXXXXXXXXXXXPLRPIVRCPTVRYHTKVRAGRG 483
           + WQ +VK WFNQP                         +RP V+ PT+RY+ KVRAGRG
Sbjct: 16  KDWQRYVKTWFNQPGRKLRRRQARQTKAAKIAPRPVEA-IRPAVKPPTIRYNMKVRAGRG 74

Query: 482 FTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFP-KGKKVL 306
           FTL E++AAG++   A TIGI VD RRRN+S ESLQ NV+RIK Y A LI+FP K  +  
Sbjct: 75  FTLEELKAAGVSRRVASTIGIPVDHRRRNRSEESLQRNVERIKVYLAHLIVFPRKAGQPK 134

Query: 305 KGEANEEERKLATQLRGPLMPVQQPAPKSVARPITEDEKNFKAYQYLRGARSIAKLVGIR 126
           KG+A +      T +   ++P+ Q A +  A+PITE+ KNF A+  L   R+ A+  G R
Sbjct: 135 KGDATDVSGAEQTDV-AAVLPITQEAVEE-AKPITEEAKNFNAFSTLSNERAYARYAGAR 192

Query: 125 AKRLKDAAENPD 90
           A   K  AE  +
Sbjct: 193 AAFQKKRAEEAE 204


>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -3

Query: 188 NFKAYQYLRGARSIAKLVGIRAKRLKDAAEN 96
           N ++ ++LR A S A++VG   +R++   EN
Sbjct: 843 NNRSEEFLRNAASQAEIVGANKERIQKTVEN 873


>SPAC23C4.02 |crn1||actin binding protein, coronin
           Crn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -3

Query: 305 KGEANEEERKLATQLRGPLMPVQQPAPKSVARPITEDE 192
           + E N ++ +  TQ +    PV++  PK  + P+T  E
Sbjct: 470 RDEDNHQKEETVTQPKREKTPVEKSFPKPASSPVTFSE 507


>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1283

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
 Frame = +3

Query: 471  TKSESSTGAYFSM----VPNSWASHYRT*RPSCRTWSY 572
            T   +STG+Y  M    +   W S   T    C TWSY
Sbjct: 1215 TVQGTSTGSYICMPHFQIQYDWCSAGVTDMSECNTWSY 1252


>SPAC2F3.12c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 279

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -1

Query: 490 VEDSLFVKLGPQD*TQYLPERLELL 416
           +ED+LF +L   D T Y  +RLE+L
Sbjct: 95  LEDALFSQLDEFDDTAYREQRLEML 119


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,495,415
Number of Sequences: 5004
Number of extensions: 46072
Number of successful extensions: 104
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)