Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0835
         (760 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0110 - 866728-866952,867035-867193,867315-867448,868225-86...   163   1e-40
03_05_0108 - 20887146-20887370,20887460-20887618,20887930-208880...   161   7e-40
06_03_0711 + 23798998-23799106,23799838-23799957,23800181-238003...    29   5.3  
02_01_0754 - 5595813-5595887,5595973-5596071,5596136-5596327,559...    29   5.3  
01_01_1166 + 9287840-9288040,9289752-9289799,9292166-9292282,929...    28   7.0  
10_08_0694 - 19929918-19930292,19930633-19930866                       28   9.3  

>06_01_0110 -
           866728-866952,867035-867193,867315-867448,868225-868333
          Length = 208

 Score =  163 bits (396), Expect = 1e-40
 Identities = 85/188 (45%), Positives = 117/188 (62%), Gaps = 2/188 (1%)
 Frame = -3

Query: 662 RXWQXFVKXWFNQPAXXXXXXXXXXXXXXXXXXXXXXXPLRPIVRCPTVRYHTKVRAGRG 483
           + WQ +VK WFNQPA                       PLRPIV+C T++Y+ K RAGRG
Sbjct: 15  KHWQNYVKTWFNQPARKQRRRIARQKKAVKIFPRPTSGPLRPIVQCQTLKYNMKSRAGRG 74

Query: 482 FTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFP-KGKKVL 306
           FTL E++AAG+   FA TIGI+VD RR+N+S+E LQ NVQR+K Y+A+L++FP + +KV 
Sbjct: 75  FTLEELKAAGIPKKFAPTIGISVDHRRKNRSLEGLQANVQRLKTYKAKLVIFPRRARKVK 134

Query: 305 KGEANEEERKLATQLRGPLMPVQQPAPKSV-ARPITEDEKNFKAYQYLRGARSIAKLVGI 129
            G++  EE   ATQ++G  MP+ +   +SV    +T+D K FKAY  LR  R   + +G 
Sbjct: 135 AGDSTPEELATATQVQGDYMPITRGEKRSVEVVKVTDDMKAFKAYAKLRVERMNQRHIGA 194

Query: 128 RAKRLKDA 105
           R KR  +A
Sbjct: 195 RQKRAAEA 202


>03_05_0108 -
           20887146-20887370,20887460-20887618,20887930-20888063,
           20888597-20888705
          Length = 208

 Score =  161 bits (390), Expect = 7e-40
 Identities = 84/188 (44%), Positives = 117/188 (62%), Gaps = 2/188 (1%)
 Frame = -3

Query: 662 RXWQXFVKXWFNQPAXXXXXXXXXXXXXXXXXXXXXXXPLRPIVRCPTVRYHTKVRAGRG 483
           + WQ +VK WFNQPA                       PLRPIV+C T++Y+ K RAGRG
Sbjct: 15  KHWQNYVKTWFNQPARKQRRRIARQKKAVKIFPRPTSGPLRPIVQCQTLKYNMKSRAGRG 74

Query: 482 FTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFP-KGKKVL 306
           FTL E++AAG+   +A TIGI+VD RR+N+S+E LQ NVQR+K Y+A+L++FP + +KV 
Sbjct: 75  FTLEELKAAGIPKKYAPTIGISVDHRRKNRSLEGLQANVQRLKTYKAKLVIFPRRARKVK 134

Query: 305 KGEANEEERKLATQLRGPLMPVQQPAPKSV-ARPITEDEKNFKAYQYLRGARSIAKLVGI 129
            G++  EE   ATQ++G  MP+ +   +SV    +T++ K FKAY  LR  R   + VG 
Sbjct: 135 AGDSTAEELATATQVQGDYMPIARGEKRSVEVVKVTDEMKAFKAYAKLRVERMNQRHVGA 194

Query: 128 RAKRLKDA 105
           R KR  +A
Sbjct: 195 RQKRAAEA 202


>06_03_0711 +
           23798998-23799106,23799838-23799957,23800181-23800317,
           23800418-23800579,23800707-23800793,23800872-23800958,
           23801317-23801454,23802023-23802214,23802287-23802385,
           23802490-23802564
          Length = 401

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +2

Query: 410 DLQQFQSFGQILGSILRP 463
           DL+  QS GQI+G +LRP
Sbjct: 54  DLKSLQSVGQIIGEVLRP 71


>02_01_0754 -
           5595813-5595887,5595973-5596071,5596136-5596327,
           5596992-5597129,5597415-5597501,5597583-5597669,
           5597795-5597956,5598089-5598225,5598483-5598602,
           5600668-5600773
          Length = 400

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +2

Query: 410 DLQQFQSFGQILGSILRP 463
           DL+  QS GQI+G +LRP
Sbjct: 53  DLKSLQSVGQIIGEVLRP 70


>01_01_1166 +
           9287840-9288040,9289752-9289799,9292166-9292282,
           9293018-9293700,9295214-9297190,9298330-9298441,
           9299848-9299904
          Length = 1064

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -3

Query: 389 VESLQINVQRIKEYRARLILFPKGKKVLKGEANEEERKLATQL 261
           ++SL+  VQR+ E R R +L P G        ++E R  A  +
Sbjct: 182 IQSLRTRVQRVSERRLRYMLNPTGSLSSSNYIDQERRLSALNI 224


>10_08_0694 - 19929918-19930292,19930633-19930866
          Length = 202

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 14/57 (24%), Positives = 28/57 (49%)
 Frame = -3

Query: 404 RRNKSVESLQINVQRIKEYRARLILFPKGKKVLKGEANEEERKLATQLRGPLMPVQQ 234
           R N   + + + +   K     LI+ P G +VL+G   E++ K A ++   L  +++
Sbjct: 54  RSNPVHKKIPVLLHHGKPIAESLIIIPPGIRVLRGSVEEDKDKAAGEMSTALQHLEE 110


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,441,229
Number of Sequences: 37544
Number of extensions: 306983
Number of successful extensions: 736
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 731
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)