Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0835
         (760 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88308-7|AAB42322.1|  207|Caenorhabditis elegans Ribosomal prote...   154   6e-38
U88308-8|AAO61436.1|   88|Caenorhabditis elegans Ribosomal prote...    57   1e-08
U39853-8|AAQ81277.1| 1609|Caenorhabditis elegans Hypothetical pr...    30   1.6  
U39853-7|AAM54194.1| 1614|Caenorhabditis elegans Hypothetical pr...    30   1.6  
U39853-6|AAM54193.2| 1632|Caenorhabditis elegans Hypothetical pr...    30   1.6  
AL023838-4|CAA19504.1|  218|Caenorhabditis elegans Hypothetical ...    29   3.6  
Z82083-9|CAB04975.1|  635|Caenorhabditis elegans Hypothetical pr...    29   4.7  
Z81503-6|CAB04115.1|  635|Caenorhabditis elegans Hypothetical pr...    29   4.7  

>U88308-7|AAB42322.1|  207|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 13, isoform a protein.
          Length = 207

 Score =  154 bits (374), Expect = 6e-38
 Identities = 79/189 (41%), Positives = 111/189 (58%), Gaps = 1/189 (0%)
 Frame = -3

Query: 662 RXWQXFVKXWFNQPAXXXXXXXXXXXXXXXXXXXXXXXPLRPIVRCPTVRYHTKVRAGRG 483
           + W   +K WF+QPA                        LR +VRCP  RY+TK R GRG
Sbjct: 16  KHWHKRIKTWFDQPARKLRRRQNRQAKAVEIAPRPVAGLLRSVVRCPQKRYNTKTRLGRG 75

Query: 482 FTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFP-KGKKVL 306
           F+L+E++AAG++   ARTIGIAVD RR NK+ E L+ N  R+KEY+A+LILFP K     
Sbjct: 76  FSLQELKAAGISQAQARTIGIAVDVRRTNKTAEGLKANADRLKEYKAKLILFPKKASAPK 135

Query: 305 KGEANEEERKLATQLRGPLMPVQQPAPKSVARPITEDEKNFKAYQYLRGARSIAKLVGIR 126
           KG+++ EE K+A QLRG ++P+         R +T+ E+  + ++ LR  R+  K  G R
Sbjct: 136 KGDSSAEELKVAAQLRGDVLPLSHTITFDEPRQVTDAERKVEIFRLLRKERADKKYRGKR 195

Query: 125 AKRLKDAAE 99
            KR ++AAE
Sbjct: 196 EKRAREAAE 204


>U88308-8|AAO61436.1|   88|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 13, isoform b protein.
          Length = 88

 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 27/72 (37%), Positives = 36/72 (50%)
 Frame = -3

Query: 662 RXWQXFVKXWFNQPAXXXXXXXXXXXXXXXXXXXXXXXPLRPIVRCPTVRYHTKVRAGRG 483
           + W   +K WF+QPA                        LR +VRCP  RY+TK R GRG
Sbjct: 16  KHWHKRIKTWFDQPARKLRRRQNRQAKAVEIAPRPVAGLLRSVVRCPQKRYNTKTRLGRG 75

Query: 482 FTLREIRAAGLN 447
           F+L+E++AA  N
Sbjct: 76  FSLQELKAAEEN 87


>U39853-8|AAQ81277.1| 1609|Caenorhabditis elegans Hypothetical protein
            F13B9.1c protein.
          Length = 1609

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = -3

Query: 335  ILFPKGKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSVARPITEDEKNFK 180
            ++F   K VLK     + +  A   +GPL+P  Q AP +V   IT+  +N K
Sbjct: 879  VVFDDIKSVLKDVPTLQVKDAAMTFKGPLIP-HQSAPHTVRLYITKQIENIK 929


>U39853-7|AAM54194.1| 1614|Caenorhabditis elegans Hypothetical protein
            F13B9.1b protein.
          Length = 1614

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = -3

Query: 335  ILFPKGKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSVARPITEDEKNFK 180
            ++F   K VLK     + +  A   +GPL+P  Q AP +V   IT+  +N K
Sbjct: 879  VVFDDIKSVLKDVPTLQVKDAAMTFKGPLIP-HQSAPHTVRLYITKQIENIK 929


>U39853-6|AAM54193.2| 1632|Caenorhabditis elegans Hypothetical protein
            F13B9.1a protein.
          Length = 1632

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = -3

Query: 335  ILFPKGKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSVARPITEDEKNFK 180
            ++F   K VLK     + +  A   +GPL+P  Q AP +V   IT+  +N K
Sbjct: 901  VVFDDIKSVLKDVPTLQVKDAAMTFKGPLIP-HQSAPHTVRLYITKQIENIK 951


>AL023838-4|CAA19504.1|  218|Caenorhabditis elegans Hypothetical
           protein Y43C5A.4 protein.
          Length = 218

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 1/84 (1%)
 Frame = -3

Query: 326 PKGKKVLKGEANEEERKLATQLRG-PLMPVQQPAPKSVARPITEDEKNFKAYQYLRGARS 150
           PKGKK  K  ++ E+++   + R     PV+          + EDEK   + +    ++ 
Sbjct: 43  PKGKKKKKLSSSHEKKRSENKARNNKKKPVELDTTDEAKSTVNEDEKEKSSKRPTAKSKK 102

Query: 149 IAKLVGIRAKRLKDAAENPDDVTK 78
             K  G + K  K   + PD   K
Sbjct: 103 SKKATGSKKKNKK--TKKPDGSEK 124


>Z82083-9|CAB04975.1|  635|Caenorhabditis elegans Hypothetical
           protein ZK1010.9 protein.
          Length = 635

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +3

Query: 174 ISFEVLFIFSDRSCN*FRSRLLNWH*WTT*LCSQLTFFFIGLTL 305
           IS E++ I +  SC   R   L  H W T +    TFF +GL +
Sbjct: 398 ISTEIVIIETVCSCLADRFHYLRQHRWITVVTVSTTFFLLGLVM 441


>Z81503-6|CAB04115.1|  635|Caenorhabditis elegans Hypothetical
           protein ZK1010.9 protein.
          Length = 635

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +3

Query: 174 ISFEVLFIFSDRSCN*FRSRLLNWH*WTT*LCSQLTFFFIGLTL 305
           IS E++ I +  SC   R   L  H W T +    TFF +GL +
Sbjct: 398 ISTEIVIIETVCSCLADRFHYLRQHRWITVVTVSTTFFLLGLVM 441


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,793,848
Number of Sequences: 27780
Number of extensions: 261315
Number of successful extensions: 645
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)