Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0835
(760 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g49010.2 68416.m05354 60S ribosomal protein L13 (RPL13B) / br... 151 4e-37
At3g49010.1 68416.m05353 60S ribosomal protein L13 (RPL13B) / br... 151 4e-37
At5g23900.1 68418.m02807 60S ribosomal protein L13 (RPL13D) 150 9e-37
At3g48960.1 68416.m05348 60S ribosomal protein L13 (RPL13C) 60S ... 134 8e-32
At5g47070.1 68418.m05800 protein kinase, putative similar to pro... 32 0.36
At3g02660.1 68416.m00257 tRNA synthetase class I (W and Y) famil... 32 0.48
At1g62250.2 68414.m07023 expressed protein 29 3.4
At1g62250.1 68414.m07022 expressed protein 29 3.4
At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4... 29 4.4
At1g45000.1 68414.m05158 26S proteasome regulatory complex subun... 29 4.4
At1g33880.1 68414.m04200 avirulence-responsive family protein / ... 29 4.4
>At3g49010.2 68416.m05354 60S ribosomal protein L13 (RPL13B) /
breast basic conserved protein 1-related (BBC1)
Length = 206
Score = 151 bits (367), Expect = 4e-37
Identities = 77/187 (41%), Positives = 112/187 (59%), Gaps = 1/187 (0%)
Frame = -3
Query: 662 RXWQXFVKXWFNQPAXXXXXXXXXXXXXXXXXXXXXXXPLRPIVRCPTVRYHTKVRAGRG 483
+ WQ +VK WFNQPA PLRP+V T++Y+ KVR G+G
Sbjct: 14 KHWQNYVKTWFNQPARKTRRRIARQKKAVKIFPRPTSGPLRPVVHGQTLKYNMKVRTGKG 73
Query: 482 FTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFP-KGKKVL 306
FTL E++AAG+ A TIGIAVD RR+N+S+E LQ NVQR+K Y+ +L++FP + +KV
Sbjct: 74 FTLEELKAAGIPKKLAPTIGIAVDHRRKNRSLEGLQTNVQRLKTYKTKLVIFPRRARKVK 133
Query: 305 KGEANEEERKLATQLRGPLMPVQQPAPKSVARPITEDEKNFKAYQYLRGARSIAKLVGIR 126
G++ EE ATQ++G +P+ + P +T + K+FKA+ +R R+ + G R
Sbjct: 134 AGDSTPEELANATQVQGDYLPIVREKPTMELVKLTSEMKSFKAFDKIRLERTNKRHAGAR 193
Query: 125 AKRLKDA 105
AKR +A
Sbjct: 194 AKRAAEA 200
>At3g49010.1 68416.m05353 60S ribosomal protein L13 (RPL13B) /
breast basic conserved protein 1-related (BBC1)
Length = 206
Score = 151 bits (367), Expect = 4e-37
Identities = 77/187 (41%), Positives = 112/187 (59%), Gaps = 1/187 (0%)
Frame = -3
Query: 662 RXWQXFVKXWFNQPAXXXXXXXXXXXXXXXXXXXXXXXPLRPIVRCPTVRYHTKVRAGRG 483
+ WQ +VK WFNQPA PLRP+V T++Y+ KVR G+G
Sbjct: 14 KHWQNYVKTWFNQPARKTRRRIARQKKAVKIFPRPTSGPLRPVVHGQTLKYNMKVRTGKG 73
Query: 482 FTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFP-KGKKVL 306
FTL E++AAG+ A TIGIAVD RR+N+S+E LQ NVQR+K Y+ +L++FP + +KV
Sbjct: 74 FTLEELKAAGIPKKLAPTIGIAVDHRRKNRSLEGLQTNVQRLKTYKTKLVIFPRRARKVK 133
Query: 305 KGEANEEERKLATQLRGPLMPVQQPAPKSVARPITEDEKNFKAYQYLRGARSIAKLVGIR 126
G++ EE ATQ++G +P+ + P +T + K+FKA+ +R R+ + G R
Sbjct: 134 AGDSTPEELANATQVQGDYLPIVREKPTMELVKLTSEMKSFKAFDKIRLERTNKRHAGAR 193
Query: 125 AKRLKDA 105
AKR +A
Sbjct: 194 AKRAAEA 200
>At5g23900.1 68418.m02807 60S ribosomal protein L13 (RPL13D)
Length = 206
Score = 150 bits (364), Expect = 9e-37
Identities = 79/187 (42%), Positives = 111/187 (59%), Gaps = 1/187 (0%)
Frame = -3
Query: 662 RXWQXFVKXWFNQPAXXXXXXXXXXXXXXXXXXXXXXXPLRPIVRCPTVRYHTKVRAGRG 483
+ WQ +VK WFNQPA PLRP+V T++Y+ KVRAG+G
Sbjct: 14 KHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTSGPLRPVVHGQTLKYNMKVRAGKG 73
Query: 482 FTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFP-KGKKVL 306
FTL E++ AG+ A TIGI+VD RR+N+S+E LQ NVQR+K Y+A+L++FP + ++V
Sbjct: 74 FTLEELKVAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRSRQVK 133
Query: 305 KGEANEEERKLATQLRGPLMPVQQPAPKSVARPITEDEKNFKAYQYLRGARSIAKLVGIR 126
G++ EE ATQ++G MP+ +T D K FKAY +R R+ A+ G R
Sbjct: 134 AGDSTPEELANATQVQGDYMPIASVKAAMELVKLTADLKAFKAYDKIRLERTNARHAGAR 193
Query: 125 AKRLKDA 105
AKR +A
Sbjct: 194 AKRAAEA 200
>At3g48960.1 68416.m05348 60S ribosomal protein L13 (RPL13C) 60S
ribosomal protein L13 (BBC1), Arabidopsis thaliana,
gb:X75162
Length = 206
Score = 134 bits (323), Expect = 8e-32
Identities = 71/187 (37%), Positives = 107/187 (57%), Gaps = 1/187 (0%)
Frame = -3
Query: 662 RXWQXFVKXWFNQPAXXXXXXXXXXXXXXXXXXXXXXXPLRPIVRCPTVRYHTKVRAGRG 483
+ W+ +VK FNQPA P+RP+V T+ Y+ KVRAG+G
Sbjct: 14 KKWENYVKTSFNQPAMKTRRRIARQNKAVKIFPRPTAGPIRPVVHAQTLTYNMKVRAGKG 73
Query: 482 FTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFPKGKKVLK 303
FTL E++AAG+ A TIGI+VD R+N+S+E Q NVQR+K Y+A+L++FP+ + +K
Sbjct: 74 FTLEELKAAGIPKKLAPTIGISVDHHRKNRSLEGFQTNVQRLKTYKAKLVIFPRCARTVK 133
Query: 302 -GEANEEERKLATQLRGPLMPVQQPAPKSVARPITEDEKNFKAYQYLRGARSIAKLVGIR 126
G++ ++E ATQ++ MP+ + P +T D K F AY +R + G+R
Sbjct: 134 VGDSAQQELANATQVQVDHMPIVREMPTMELVKLTSDMKLFNAYDKIRLEGINKRHAGVR 193
Query: 125 AKRLKDA 105
AKR +A
Sbjct: 194 AKRAAEA 200
>At5g47070.1 68418.m05800 protein kinase, putative similar to
protein kinase [Lophopyrum elongatum]
gi|13022177|gb|AAK11674
Length = 410
Score = 32.3 bits (70), Expect = 0.36
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = -3
Query: 323 KGKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSVARPITEDEKNFKAYQY 168
KGK++L+ A E + T P P+P+S+ TE E+N + + Y
Sbjct: 25 KGKELLQNSAPELTNRSETSSFNLQTPRSLPSPRSIKDLYTEREQNLRVFSY 76
>At3g02660.1 68416.m00257 tRNA synthetase class I (W and Y) family
protein similar to SP|P00952 Tyrosyl-tRNA synthetase (EC
6.1.1.1) (Tyrosine--tRNA ligase) (TyrRS) {Bacillus
stearothermophilus}; contains Pfam profiles PF00579:
tRNA synthetases class I (W and Y), PF01479: S4 domain
Length = 511
Score = 31.9 bits (69), Expect = 0.48
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +1
Query: 430 VRANTGFNPAALISRRVNPLPARTLVWYRTVGHRTIGRNGPAAGR 564
+R GF+P A N L L W++ GH+ +G G A GR
Sbjct: 115 LRVYCGFDPTAESLHLGNLLGIIVLSWFQRCGHQAVGLIGGATGR 159
>At1g62250.2 68414.m07023 expressed protein
Length = 223
Score = 29.1 bits (62), Expect = 3.4
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = -3
Query: 515 RYHTKVRAGRGFTLREIRAAGLNPVFARTIGIA-VDPRRRNKSVESLQINVQRIKEY 348
RY T + G G TL+E +AG+N A +G D R+ +++ + ++R++ Y
Sbjct: 98 RYRTVIGRGEGETLKEFISAGVN---AYALGCTDEDLRKELMAMKDSGLEIERMENY 151
>At1g62250.1 68414.m07022 expressed protein
Length = 267
Score = 29.1 bits (62), Expect = 3.4
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = -3
Query: 515 RYHTKVRAGRGFTLREIRAAGLNPVFARTIGIA-VDPRRRNKSVESLQINVQRIKEY 348
RY T + G G TL+E +AG+N A +G D R+ +++ + ++R++ Y
Sbjct: 98 RYRTVIGRGEGETLKEFISAGVN---AYALGCTDEDLRKELMAMKDSGLEIERMENY 151
>At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4a)
gb|AAF22524.1
Length = 399
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +2
Query: 410 DLQQFQSFGQILGSILRP 463
DL+ QS GQI+G +LRP
Sbjct: 52 DLKSLQSVGQIIGEVLRP 69
>At1g45000.1 68414.m05158 26S proteasome regulatory complex subunit
p42D, putative similar to 26S proteasome regulatory
complex subunit p42D [Drosophila melanogaster]
gi|6434958|gb|AAF08391
Length = 399
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +2
Query: 410 DLQQFQSFGQILGSILRP 463
DL+ QS GQI+G +LRP
Sbjct: 52 DLKSLQSVGQIIGEVLRP 69
>At1g33880.1 68414.m04200 avirulence-responsive family protein /
avirulence induced gene (AIG1) family protein similar to
AIG1 protein SP:P54120 [Arabidopsis thaliana]; contains
Pfam PF04548: AIG1 family;
Length = 234
Score = 28.7 bits (61), Expect = 4.4
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = -3
Query: 353 EYRARLILFPKGKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSVARPITED 195
E+ R++ F G+KVL +E A Q+ + V + K+ +P TED
Sbjct: 165 EFLMRVLRFCNGRKVLFNNMTNDEGVKAEQVNQVMAHVAAISKKNDEKPYTED 217
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,117,409
Number of Sequences: 28952
Number of extensions: 244470
Number of successful extensions: 587
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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