Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0833
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|...   131   1e-31
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    28   1.0  
SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su...    27   1.8  
SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit |Schizosa...    27   2.3  
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce...    27   2.3  
SPCC18B5.11c |cds1||replication checkpoint kinase Cds1|Schizosac...    26   5.4  
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch...    25   7.2  
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    25   7.2  

>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
           Mts4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score =  131 bits (316), Expect = 1e-31
 Identities = 68/189 (35%), Positives = 102/189 (53%), Gaps = 5/189 (2%)
 Frame = +1

Query: 22  RXECLKYCLLGTLSNVGDWGHEYVRQLEGEIAXEWNIEN-----MDSLLPLVRDVITFDM 186
           + E LKY L G  ++   WGHEYVR L  EI  E+          D L+ L   ++ F +
Sbjct: 139 KHESLKYRLQGVTTDPSLWGHEYVRHLASEIEEEFASRQEEEAPTDDLMELALTIVPFFL 198

Query: 187 KHSAEIQACDLLMEIDRLDLLTQHMDQSNYPRVCLYLIGCASYVXEPESTQILQGGLHTY 366
            H+AE  A DLL E+  ++ +   ++  N  RVCLY+  C + +  PE   +L+     Y
Sbjct: 199 THNAEADAIDLLQELGAIEKVVPFVELDNASRVCLYITSCVNLLPFPEDVAMLRTAHAIY 258

Query: 367 LRFGEYPXAMLXAMQLHXKAKCEEVFNACNDPLIKKQLCYLLARQYIPLXXDDEDLRTIL 546
            +F +   A+  A++L   +  +E   A  DPL+KKQ+ Y+LARQ IP+   DE+L   L
Sbjct: 259 RKFDQLTQALNVAIRLDDMSLIKEDCEAATDPLLKKQMSYMLARQQIPMDMGDEELNDAL 318

Query: 547 LNAHINDHF 573
            N H++DHF
Sbjct: 319 NNTHLSDHF 327


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1375

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 88   IHVPNHLHLTMFLEDNTSNTLSFSATFQS 2
            +++P H+HL   LE+  SNT    A F+S
Sbjct: 1042 MNIPGHIHLLRELEEEKSNTQRKIAHFES 1070


>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC subunit
            Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = +1

Query: 337  QILQGGLHTYLRFGEYPXAML-XAMQLHXKAKCEEVFNACNDPLIKKQLCYLLARQYI 507
            +IL+G L+TY + G++P   L  A   H +   ++  N  N  L++   C L ++  I
Sbjct: 871  KILEGWLYTYAKVGQFPFKRLTQASSPHTQISLDK--NPLNRRLLEHVCCDLTSKLLI 926


>SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 589

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +1

Query: 421 KAKCEEVFNACNDPLIKKQLCYLLARQYIPLXXDDEDLRTILL 549
           KA  + +  AC   L + ++C+LL R  +    +  D +T+L+
Sbjct: 296 KADIDYLNEACGLSLPEDEICHLLTRMMLTAKPNPNDSKTLLV 338


>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1067

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 14/64 (21%), Positives = 33/64 (51%)
 Frame = -1

Query: 194  ECFMSNVITSRTSGNSESMFSIFHSSAISPSNCLTYSCPQSPTFDNVPRRQYFKHSXLFC 15
            E  + N+++S ++ + E    +     +  S+ ++YS  +S    + P  ++F+H+ L  
Sbjct: 876  ETIVKNILSSNSTPSLERTGQL--GDVMKESSEISYSFSKSFLSKHFPNNKFFEHARLHM 933

Query: 14   NFPE 3
            + PE
Sbjct: 934  HCPE 937


>SPCC18B5.11c |cds1||replication checkpoint kinase
           Cds1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 460

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 7/35 (20%), Positives = 20/35 (57%)
 Frame = -2

Query: 559 YERSVELCADLHHPXXMVCIDVQVSSTVAFLLKDH 455
           ++R +++   LHHP  + C ++  +    F++ ++
Sbjct: 216 FQREIDILKSLHHPGVVQCHEIFENDDELFIVMEY 250


>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 556 HINDHFLMSXKGA*YYGNRKLHTMFIKHG 642
           H+ND+F  S   A YYG++    + +  G
Sbjct: 223 HVNDYFNTSYAPAEYYGSQTASKVIVTFG 251


>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1315

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +1

Query: 241  DLLTQHMDQSNYPRVCLYLIGCASY 315
            DL   + D   Y  +CL +  CA Y
Sbjct: 1106 DLFNNYADPLGYGEICLSIFQCADY 1130


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,470,293
Number of Sequences: 5004
Number of extensions: 45510
Number of successful extensions: 128
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)