Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0833
(650 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1276 - 28907726-28907842,28908012-28908062,28908146-289082... 145 3e-35
02_01_0356 + 2563773-2563898,2564031-2564131,2564375-2564498,256... 140 9e-34
09_02_0460 + 9567656-9567766,9567849-9567949,9568527-9568647,956... 115 4e-26
07_01_0071 - 522920-523063,524125-524212,524289-524677 29 2.4
02_05_0833 + 32080845-32081118,32081483-32081663,32081825-320819... 29 3.2
02_05_0562 - 29970207-29970224,29970290-29970364,29971083-299714... 27 9.8
>06_03_1276 -
28907726-28907842,28908012-28908062,28908146-28908254,
28908345-28908430,28908537-28908650,28908731-28908790,
28909088-28909303,28909401-28909514,28910632-28910853,
28910946-28911050,28911136-28911276,28911368-28911472,
28911538-28911645,28911753-28911911,28912060-28912140,
28912219-28912330,28912433-28912515,28912631-28912669,
28913061-28913126,28913601-28913643,28913969-28914036,
28914264-28914323,28914409-28914529,28915167-28915267,
28915354-28915494
Length = 873
Score = 145 bits (351), Expect = 3e-35
Identities = 68/173 (39%), Positives = 108/173 (62%), Gaps = 6/173 (3%)
Frame = +1
Query: 28 ECLKYCLLGTLSNVGDWGHEYVRQLEGEIAXEWNIEN-----MDSLLPLVRDVITFDMKH 192
E L Y ++G+ ++G WGHEYVR L GEIA E+ DSL LV +++F MKH
Sbjct: 142 ESLNYRMIGSEGDIGSWGHEYVRNLAGEIAQEFQKRQDDGMPTDSLKELVEQIVSFHMKH 201
Query: 193 SAEIQACDLLMEIDRLDLLTQHMDQSNYPRVCLYLIGCASYVXEPESTQILQGGLHTYLR 372
+AE +A DLLME+++LDLL +H+D +NY R CLYL + Y+ P+ L+ Y++
Sbjct: 202 NAEPEAVDLLMEVEKLDLLVKHVDSTNYKRTCLYLTSSSKYLPAPDDMSALKIAFEIYMK 261
Query: 373 FGEYPXAMLXAMQLHXKA-KCEEVFNACNDPLIKKQLCYLLARQYIPLXXDDE 528
FG++ A+ A+ L+ K+ + + +F A +D +KKQ +++AR + + DD+
Sbjct: 262 FGDFANALRIALLLYDKSLELKPIFTATDDFQLKKQFAFIIARHGLSIEIDDD 314
>02_01_0356 +
2563773-2563898,2564031-2564131,2564375-2564498,
2564592-2564651,2564762-2564829,2565520-2565562,
2566026-2566091,2566237-2566275,2566375-2566457,
2566654-2566765,2566840-2566923,2567026-2567184,
2567268-2567372,2567451-2567555,2567661-2567801,
2567920-2568024,2568111-2568335,2568762-2568875,
2568963-2569178,2569674-2569733,2569827-2569940,
2570047-2570132,2570211-2570319,2570408-2570586,
2570673-2570741,2570792-2571005
Length = 968
Score = 140 bits (339), Expect = 9e-34
Identities = 70/174 (40%), Positives = 106/174 (60%), Gaps = 7/174 (4%)
Frame = +1
Query: 28 ECLKYCLLGTLSNVGDWGHEYVRQLEGEIAXEWNIEN-----MDSLLPLVRDVITFDMKH 192
E LKY LLG+ ++G WGHEYVR L GEIA E+ +D+L+ LV+ +++F MKH
Sbjct: 138 ESLKYRLLGSEGDIGSWGHEYVRNLAGEIAQEFQKRQDDDMPIDALMELVQQIVSFHMKH 197
Query: 193 SAEIQACDLLMEIDRLDLLTQHMDQSNYPRVCLYLIGCASYVXEPESTQILQGGLHTYLR 372
+AE +A DLLME++ LDLL +H+D +NY R CLYL + Y+ P+ L Y++
Sbjct: 198 NAEPEAVDLLMEVEDLDLLVEHVDSTNYKRTCLYLTSSSKYLPAPDDMLALDIAYTIYMK 257
Query: 373 FGEYPXAMLXAMQLHXKAK--CEEVFNACNDPLIKKQLCYLLARQYIPLXXDDE 528
F + A+ A+ L K+ ++V+ A D +KKQ +++AR + + DDE
Sbjct: 258 FEDLTSALRIALLLDNKSMQYVKQVYTATEDLQLKKQFSFIIARHGLAMEIDDE 311
>09_02_0460 +
9567656-9567766,9567849-9567949,9568527-9568647,
9568733-9568792,9569022-9569089,9569469-9569535,
9569586-9569666,9570152-9570217,9570372-9570410,
9570527-9570609,9570712-9570823,9570902-9570982,
9571132-9571290,9571397-9571504,9571570-9571674,
9571765-9571905,9572007-9572147,9572205-9572426,
9573617-9573730,9573830-9574045,9574373-9574432,
9574513-9574626,9574735-9574820,9574904-9575012,
9575099-9575277,9575357-9575429
Length = 938
Score = 115 bits (276), Expect = 4e-26
Identities = 57/151 (37%), Positives = 91/151 (60%), Gaps = 6/151 (3%)
Frame = +1
Query: 94 RQLEGEIAXEWNIEN-----MDSLLPLVRDVITFDMKHSAEIQACDLLMEIDRLDLLTQH 258
R L GEIA E+ DSL LV +++F MKH+AE +A DLLME+++LDLL +H
Sbjct: 189 RNLAGEIAQEFQKRQDDGMTTDSLKELVEQIVSFHMKHNAEPEAVDLLMEVEKLDLLVKH 248
Query: 259 MDQSNYPRVCLYLIGCASYVXEPESTQILQGGLHTYLRFGEYPXAMLXAMQLHXKA-KCE 435
+D +NY R CLYL + Y+ P+ L+ Y++FG++ A+ A+ L K+ + +
Sbjct: 249 VDSTNYKRTCLYLTSSSKYLPAPDDMSALKIAFEIYMKFGDFANALRIALLLDDKSLELK 308
Query: 436 EVFNACNDPLIKKQLCYLLARQYIPLXXDDE 528
++F A +D +KKQ +++AR + DD+
Sbjct: 309 QIFTATDDFHLKKQFAFIIARHGLSTDIDDD 339
Score = 38.7 bits (86), Expect = 0.004
Identities = 17/35 (48%), Positives = 25/35 (71%)
Frame = +1
Query: 28 ECLKYCLLGTLSNVGDWGHEYVRQLEGEIAXEWNI 132
E LKY ++G+ ++G WGHEYVR L EI E+++
Sbjct: 132 ESLKYRMIGSEGDIGSWGHEYVR-LYLEITLEFSV 165
>07_01_0071 - 522920-523063,524125-524212,524289-524677
Length = 206
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = +1
Query: 37 KYCLLGTLSNVGDWG-HEYVRQLE 105
KYCLLG LS W H+ +R+LE
Sbjct: 139 KYCLLGQLSKEVGWNYHDTIRELE 162
>02_05_0833 +
32080845-32081118,32081483-32081663,32081825-32081999,
32082088-32082220,32082303-32082373,32082738-32082821,
32083106-32083196,32083315-32083835,32083932-32084096,
32084181-32084399,32084859-32084986,32085104-32085293,
32085478-32085561,32085643-32085740,32086127-32086391,
32086511-32086673,32086792-32086972,32087299-32087370,
32087473-32087614
Length = 1078
Score = 29.1 bits (62), Expect = 3.2
Identities = 26/106 (24%), Positives = 45/106 (42%), Gaps = 4/106 (3%)
Frame = +1
Query: 82 HEYVRQLEGEIAXEWNIENMDSLLPLVRDVITFDMKHSAEIQAC--DLLMEIDRLDLLTQ 255
HEY +L E E +I+ S L + K AE+ + D ++ + T
Sbjct: 97 HEYAAKLGFEKVSEQSIDECKSTAVLYKH-----KKTGAEVMSVSNDDENKVFGIVFRTP 151
Query: 256 HMDQSNYPRVCLYLIGCAS--YVXEPESTQILQGGLHTYLRFGEYP 387
+ + P + + + C S Y + ++L+G LHT+L YP
Sbjct: 152 PKNSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLHTFLNAFTYP 197
>02_05_0562 -
29970207-29970224,29970290-29970364,29971083-29971441,
29971572-29971713,29971906-29972025,29972139-29972216,
29972330-29972429,29972522-29972571,29972827-29972904,
29973624-29973751,29973776-29973977,29974045-29974144,
29974236-29974551,29974645-29974690,29975526-29975622,
29977254-29977258,29977643-29977708,29978631-29978690,
29979167-29979272,29979513-29979658,29980731-29980813,
29980951-29981056,29996243-29996266,29996378-29996438,
29996467-29996750,29996914-29997096
Length = 1010
Score = 27.5 bits (58), Expect = 9.8
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Frame = +1
Query: 73 DWGHEYVRQLEGEIAXEWNIENMDSLLPLVRDVITFDMKHSAEIQACDLLMEI--DRLDL 246
D+ Y+ + ++A E I N +L VRD + + K A I AC L EI D L +
Sbjct: 307 DYERGYLNSADVKMALEKAINN---ILEPVRDYFSGNTKAQALIMACQLQNEITGDVLKI 363
Query: 247 LTQHMDQSNYPRVCLYLIGCASYV 318
Q+ + ++ R L G SY+
Sbjct: 364 QMQNKEMRHH-RQRLRDSGATSYL 386
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,122,991
Number of Sequences: 37544
Number of extensions: 268055
Number of successful extensions: 486
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 481
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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