Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0833
         (650 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20852| Best HMM Match : PC_rep (HMM E-Value=1.8e-13)               146   1e-35
SB_531| Best HMM Match : wnt (HMM E-Value=0)                           29   2.5  

>SB_20852| Best HMM Match : PC_rep (HMM E-Value=1.8e-13)
          Length = 638

 Score =  146 bits (354), Expect = 1e-35
 Identities = 79/205 (38%), Positives = 124/205 (60%), Gaps = 22/205 (10%)
 Frame = +1

Query: 28  ECLKYCLLGTLSNVGDWGHEYVRQLEGEIAXEWNIE-----NMDSLLPLVRDVITFDMKH 192
           ECL++ +LG+  ++  WGHEYVR L  EI  E+         ++ L+ L +++I ++M+H
Sbjct: 127 ECLQFRMLGSKESLESWGHEYVRHLSEEIRAEYGERLCKEITIEQLVGLAQEIIPYNMQH 186

Query: 193 SAEIQACDLLMEIDRLDLLTQHMDQSNYPRVCLYLIGCASYVXEPESTQILQGGLHTYLR 372
           +AE  ACDLLMEI+RLDLL  + D++N+ RVCLYL  C +YV EPE + +L+  L  + +
Sbjct: 187 NAETDACDLLMEIERLDLLEGYTDKNNFQRVCLYLTSCVNYVPEPEDSTLLRTALSIFRK 246

Query: 373 FGEYPXAMLXAMQLHXKAKCEEVFNAC------------NDPLIKKQLCYLLARQYIPLX 516
           F   P A+  A+QL+     +E+F +C               LI++Q+ ++LARQ I L 
Sbjct: 247 FDRQPEALQLAIQLNDIELVKEIFLSCTGRNNVGCAFSEEKKLIQRQMAFMLARQQIFLE 306

Query: 517 XDD-----EDLRTILLNAHINDHFL 576
            D+     EDL  I+ N+ +N++FL
Sbjct: 307 LDEDMDDYEDLMLIMSNSLLNNNFL 331


>SB_531| Best HMM Match : wnt (HMM E-Value=0)
          Length = 646

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 19/57 (33%), Positives = 23/57 (40%)
 Frame = -1

Query: 176 VITSRTSGNSESMFSIFHSSAISPSNCLTYSCPQSPTFDNVPRRQYFKHSXLFCNFP 6
           V+ S   G S ++F   H     P NC T    +SP F N         S  FC FP
Sbjct: 300 VMDSVKDGASVALFECQHQFRYRPWNCTTVQFSRSPVFGNSINGALRIASDFFC-FP 355


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,320,608
Number of Sequences: 59808
Number of extensions: 333218
Number of successful extensions: 573
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 572
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)