Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0833
         (650 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039052-4|AAF98630.1|  981|Caenorhabditis elegans Proteasome re...   149   2e-36
Z82082-11|CAH10808.1|  721|Caenorhabditis elegans Hypothetical p...    32   0.41 
Z82082-9|CAB04966.2|  586|Caenorhabditis elegans Hypothetical pr...    32   0.41 
AL132902-16|CAB82004.2|  721|Caenorhabditis elegans Hypothetical...    32   0.41 

>AF039052-4|AAF98630.1|  981|Caenorhabditis elegans Proteasome
           regulatory particle,non-atpase-like protein 1 protein.
          Length = 981

 Score =  149 bits (361), Expect = 2e-36
 Identities = 71/194 (36%), Positives = 118/194 (60%), Gaps = 9/194 (4%)
 Frame = +1

Query: 19  KRXECLKYCLLGTLSNVGDWGHEYVRQLEGEIAXEWNIENMDS-----LLPLVRDVITFD 183
           +R + + Y +LG+   +GDWGHEYVR L  E++ EW  E         LL L +D+++  
Sbjct: 123 ERTDTINYRILGSHEPIGDWGHEYVRHLAMEMSEEWKKEGTSDARKAELLKLTQDIVSHH 182

Query: 184 MKHSAEIQACDLLMEIDRLDLLTQHMDQSNYPRVCLYLIGCASYVXEPESTQILQGGLHT 363
           MKH+AE++ACDLL+EI+R+DLL  ++ + ++ RVCLYL+ CA    +P++  +++  L  
Sbjct: 183 MKHNAEVEACDLLIEIERIDLLISYVQEVDHQRVCLYLLSCAPLTPDPDNIILIRTALQL 242

Query: 364 YLRFGEYPXAMLXAMQLHXKAKCEEVFNACNDPLIKKQLCYLLARQYIPL----XXDDED 531
           YL+F  Y  A+  A+ ++   +  ++F   +DPL++KQ+  LL R  I L      D + 
Sbjct: 243 YLKFNRYLEAVRCAIMVNDIPQVHQIFAKASDPLLRKQMAILLGRHQIFLDYEGSADSDA 302

Query: 532 LRTILLNAHINDHF 573
           L  +  NAH+ ++F
Sbjct: 303 LAELNSNAHLYEYF 316


>Z82082-11|CAH10808.1|  721|Caenorhabditis elegans Hypothetical
           protein Y71A12B.12a protein.
          Length = 721

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +1

Query: 355 LHTYLRFGEYPXAMLXAMQL-HXKAKCEEVFNACNDPLIKKQLCYLLA 495
           L T+     Y    + A++L H  +  E VF  C D L+KKQ  YLLA
Sbjct: 592 LKTWTSDRAYLVLSILALRLNHSDSSTECVFKKCADELLKKQFPYLLA 639


>Z82082-9|CAB04966.2|  586|Caenorhabditis elegans Hypothetical
           protein Y71A12B.12b protein.
          Length = 586

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +1

Query: 355 LHTYLRFGEYPXAMLXAMQL-HXKAKCEEVFNACNDPLIKKQLCYLLA 495
           L T+     Y    + A++L H  +  E VF  C D L+KKQ  YLLA
Sbjct: 457 LKTWTSDRAYLVLSILALRLNHSDSSTECVFKKCADELLKKQFPYLLA 504


>AL132902-16|CAB82004.2|  721|Caenorhabditis elegans Hypothetical
           protein Y71A12B.12a protein.
          Length = 721

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +1

Query: 355 LHTYLRFGEYPXAMLXAMQL-HXKAKCEEVFNACNDPLIKKQLCYLLA 495
           L T+     Y    + A++L H  +  E VF  C D L+KKQ  YLLA
Sbjct: 592 LKTWTSDRAYLVLSILALRLNHSDSSTECVFKKCADELLKKQFPYLLA 639


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,680,060
Number of Sequences: 27780
Number of extensions: 258357
Number of successful extensions: 604
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)