Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0833
         (650 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    23   1.9  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   5.9  
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    21   7.8  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    21   7.8  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    21   7.8  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   7.8  

>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +2

Query: 251 HNIWIKATTQESAFILLDVQVM 316
           H+I +  TT++ A + L VQ++
Sbjct: 170 HDIAVNTTTEKGALVTLSVQLL 191


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +1

Query: 325 PESTQILQGGLHTYLRFG 378
           P+S    Q GL  YLRFG
Sbjct: 259 PQSLLPSQTGLSPYLRFG 276


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +1

Query: 91  VRQLEGEIAXEWNIENMDSLLPLVR 165
           V + EG++  +  IE +D++LP  R
Sbjct: 143 VERKEGKVEGKCLIEALDAILPPTR 167


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +1

Query: 91  VRQLEGEIAXEWNIENMDSLLPLVR 165
           V + EG++  +  IE +D++LP  R
Sbjct: 159 VERKEGKVEGKCLIEALDAILPPTR 183


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +1

Query: 91  VRQLEGEIAXEWNIENMDSLLPLVR 165
           V + EG++  +  IE +D++LP  R
Sbjct: 216 VERKEGKVEGKCLIEALDAILPPTR 240


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 58  LSNVGDWGHEYVRQLE 105
           + N G W  EY R+LE
Sbjct: 288 VKNSGQWLREYDRELE 303


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,408
Number of Sequences: 438
Number of extensions: 3207
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)