Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0833
(650 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g20580.1 68415.m02404 26S proteasome regulatory subunit S2 (R... 155 3e-38
At4g28470.1 68417.m04073 26S proteasome regulatory subunit, puta... 151 5e-37
At3g49610.1 68416.m05422 hypothetical protein contains Pfam prof... 30 1.5
At3g07110.1 68416.m00847 60S ribosomal protein L13A (RPL13aA) si... 29 2.7
At5g48760.1 68418.m06034 60S ribosomal protein L13A (RPL13aD) 29 3.5
At4g13170.1 68417.m02049 60S ribosomal protein L13A (RPL13aC) ri... 29 3.5
At3g24830.1 68416.m03115 60S ribosomal protein L13A (RPL13aB) si... 29 3.5
At3g19170.1 68416.m02434 peptidase M16 family protein / insulina... 28 4.7
At1g49630.3 68414.m05566 peptidase M16 family protein / insulina... 28 4.7
At1g49630.2 68414.m05565 peptidase M16 family protein / insulina... 28 4.7
At1g49630.1 68414.m05564 peptidase M16 family protein / insulina... 28 4.7
At3g02890.1 68416.m00284 PHD finger protein-related contains low... 27 8.2
>At2g20580.1 68415.m02404 26S proteasome regulatory subunit S2
(RPN1) contains an APC-complex (cyclosome) and
proteasome component repeat ( PS50248)
Length = 891
Score = 155 bits (375), Expect = 3e-38
Identities = 73/172 (42%), Positives = 107/172 (62%), Gaps = 5/172 (2%)
Frame = +1
Query: 28 ECLKYCLLGTLSNVGDWGHEYVRQLEGEIAXEWNIE-----NMDSLLPLVRDVITFDMKH 192
E L++ L+GT ++G WGHEYVR L GEIA E+ ++D L+ LV+ ++ F MKH
Sbjct: 134 ESLRFRLIGTEGDIGSWGHEYVRNLAGEIAQEYTKRQSEEASIDDLMELVQQIVAFHMKH 193
Query: 193 SAEIQACDLLMEIDRLDLLTQHMDQSNYPRVCLYLIGCASYVXEPESTQILQGGLHTYLR 372
+AE +A DLLM+++ LDLL +H+D++N+ R C YL A Y+ P+ +L Y++
Sbjct: 194 NAETEAVDLLMDVEDLDLLLEHVDKTNFKRTCNYLTSAARYLPGPDDMLVLDISYMIYMK 253
Query: 373 FGEYPXAMLXAMQLHXKAKCEEVFNACNDPLIKKQLCYLLARQYIPLXXDDE 528
F EYP A+ A+ L ++VF +C D L KKQ CY++AR I DDE
Sbjct: 254 FEEYPNALQIALFLDNTQYVKQVFTSCTDLLKKKQFCYMIARHGITFELDDE 305
>At4g28470.1 68417.m04073 26S proteasome regulatory subunit,
putative contains Pfam domain PF01851:
Proteasome/cyclosome repeat
Length = 1103
Score = 151 bits (365), Expect = 5e-37
Identities = 71/172 (41%), Positives = 106/172 (61%), Gaps = 5/172 (2%)
Frame = +1
Query: 28 ECLKYCLLGTLSNVGDWGHEYVRQLEGEIAXEWNIE-----NMDSLLPLVRDVITFDMKH 192
E L Y L G+ S++G WGHEYVR L GEIA E+ I +++ L+ LV+ +++F MKH
Sbjct: 160 ESLNYRLNGSESDIGSWGHEYVRNLAGEIAKEYTIRQGEESSIEDLMDLVQQIVSFHMKH 219
Query: 193 SAEIQACDLLMEIDRLDLLTQHMDQSNYPRVCLYLIGCASYVXEPESTQILQGGLHTYLR 372
+AE +A DLLM+++ LDLL +H+D +N+ R C YL A Y+ P+ +L Y++
Sbjct: 220 NAETEAVDLLMDVEDLDLLLEHVDNTNFRRTCNYLTSAAKYLPGPDDMLVLDIAYMIYIK 279
Query: 373 FGEYPXAMLXAMQLHXKAKCEEVFNACNDPLIKKQLCYLLARQYIPLXXDDE 528
F EYP A+ A+ L ++VF +C D + KKQ CY++AR + D E
Sbjct: 280 FAEYPNALQIALFLDNMQYVKQVFTSCTDLVKKKQFCYMIARHGMTFELDQE 331
>At3g49610.1 68416.m05422 hypothetical protein contains Pfam profile
PF03754: Domain of unknown function (DUF313)
Length = 334
Score = 29.9 bits (64), Expect = 1.5
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Frame = -1
Query: 200 SAECFMSNVITSRTSGNSESMFSIFHSSAI------SPSNCLTYSCPQSPTFDNVPRRQY 39
S ECF + V T R N + S+F++ SP+ + S P S +N R++Y
Sbjct: 106 SLECFFTRVYTRRNHNNVSTSSSLFNTDEFERTETKSPTIRNSQSSPSSCLMENTKRKRY 165
>At3g07110.1 68416.m00847 60S ribosomal protein L13A (RPL13aA)
similar to ribosomal protein L13A GB:O49885 [Lupinus
luteus]
Length = 206
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = +1
Query: 37 KYCLLGTLSNVGDWGH-EYVRQLEGE 111
KYCLLG LS+ W H + +++LE +
Sbjct: 139 KYCLLGRLSSEVGWNHYDTIKELENK 164
>At5g48760.1 68418.m06034 60S ribosomal protein L13A (RPL13aD)
Length = 206
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Frame = +1
Query: 37 KYCLLGTLSNVGDWGH-EYVRQLE 105
KYCLLG LS+ W H + +++LE
Sbjct: 139 KYCLLGRLSSEVGWNHYDTIKELE 162
>At4g13170.1 68417.m02049 60S ribosomal protein L13A (RPL13aC)
ribosomal protein L13a -Lupinus luteus,PID:e1237871
Length = 206
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Frame = +1
Query: 37 KYCLLGTLSNVGDWGH-EYVRQLE 105
KYCLLG LS+ W H + +++LE
Sbjct: 139 KYCLLGRLSSEVGWNHYDTIKELE 162
>At3g24830.1 68416.m03115 60S ribosomal protein L13A (RPL13aB)
similar to 60S RIBOSOMAL PROTEIN L13A GB:P35427 from
[Rattus norvegicus]
Length = 206
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Frame = +1
Query: 37 KYCLLGTLSNVGDWGH-EYVRQLE 105
KYCLLG LS+ W H + +++LE
Sbjct: 139 KYCLLGRLSSEVGWNHYDTIKELE 162
>At3g19170.1 68416.m02434 peptidase M16 family protein / insulinase
family protein contains Pfam domain, PF05193: Peptidase
M16 inactive domain
Length = 1080
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = +1
Query: 250 TQHMDQSNYPRVCLYLIGCAS--YVXEPESTQILQGGLHTYLRFGEYP 387
T D + P + + + C S Y + ++L+G LHT+L YP
Sbjct: 152 TPPKDSTGIPHILEHSVLCGSRKYPVKEPFVELLKGSLHTFLNAFTYP 199
>At1g49630.3 68414.m05566 peptidase M16 family protein / insulinase
family protein contains Pfam domain, PF05193: Peptidase
M16 inactive domain
Length = 1080
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = +1
Query: 250 TQHMDQSNYPRVCLYLIGCAS--YVXEPESTQILQGGLHTYLRFGEYP 387
T D + P + + + C S Y + ++L+G LHT+L YP
Sbjct: 151 TPPKDSTGIPHILEHSVLCGSRKYPMKEPFVELLKGSLHTFLNAFTYP 198
>At1g49630.2 68414.m05565 peptidase M16 family protein / insulinase
family protein contains Pfam domain, PF05193: Peptidase
M16 inactive domain
Length = 1080
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = +1
Query: 250 TQHMDQSNYPRVCLYLIGCAS--YVXEPESTQILQGGLHTYLRFGEYP 387
T D + P + + + C S Y + ++L+G LHT+L YP
Sbjct: 151 TPPKDSTGIPHILEHSVLCGSRKYPMKEPFVELLKGSLHTFLNAFTYP 198
>At1g49630.1 68414.m05564 peptidase M16 family protein / insulinase
family protein contains Pfam domain, PF05193: Peptidase
M16 inactive domain
Length = 1080
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = +1
Query: 250 TQHMDQSNYPRVCLYLIGCAS--YVXEPESTQILQGGLHTYLRFGEYP 387
T D + P + + + C S Y + ++L+G LHT+L YP
Sbjct: 151 TPPKDSTGIPHILEHSVLCGSRKYPMKEPFVELLKGSLHTFLNAFTYP 198
>At3g02890.1 68416.m00284 PHD finger protein-related contains low
similarity to PHD-finger domain proteins
Length = 963
Score = 27.5 bits (58), Expect = 8.2
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +3
Query: 246 ADTTYGSKQLPKSLPLSYWMCKLC 317
A+ TY + + K +P YW+C+ C
Sbjct: 227 AEHTYCMRVMLKKVPKGYWLCEEC 250
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,638,653
Number of Sequences: 28952
Number of extensions: 230736
Number of successful extensions: 511
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 509
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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