Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0831
         (650 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5714| Best HMM Match : CBM_X (HMM E-Value=1.9)                      29   3.3  
SB_47339| Best HMM Match : Rubredoxin (HMM E-Value=0.76)               29   4.3  
SB_23698| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_33208| Best HMM Match : Pepsin-I3 (HMM E-Value=4.7)                 28   7.6  

>SB_5714| Best HMM Match : CBM_X (HMM E-Value=1.9)
          Length = 975

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +3

Query: 348 HADYYTRVRAITTPCYYWCIIKG*SFNFNKLSVSKKCKSCGVAGSSL 488
           H DY T+V  +    Y+ C      ++  +      C+SCGV G SL
Sbjct: 446 HYDYVTKVHRVLGHTYF-CETCNKGYSSRQHPCHGLCRSCGVVGCSL 491


>SB_47339| Best HMM Match : Rubredoxin (HMM E-Value=0.76)
          Length = 730

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +3

Query: 348 HADYYTRVRAITTPCYYWCIIKG*SFNFNKLSVSKKCKSCGVAGSSL 488
           H DY T+V  +    Y+ C      ++  +      C+SCGV G SL
Sbjct: 250 HYDYVTKVHRVLGHTYF-CKTCNKGYSSPQHPCDGLCRSCGVVGCSL 295


>SB_23698| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 964

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +3

Query: 348 HADYYTRVRAITTPCYYWCIIKG*SFNFNKLSVSKKCKSCGVAGSSL 488
           H DY T+V  +    Y+ C      ++  +      C+SCGV G SL
Sbjct: 488 HYDYVTKVHRVLGHTYF-CKTCNKGYSSPQHPCDGLCRSCGVVGCSL 533


>SB_33208| Best HMM Match : Pepsin-I3 (HMM E-Value=4.7)
          Length = 256

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -1

Query: 407 YTPIVTRGCYCTYSGIVIGMSRELSTKSGEPCAHRT 300
           + P V  GC    S   +G  ++L+     P AHRT
Sbjct: 60  FKPAVDTGCSVANSRTFLGNKKDLNQTQPSPLAHRT 95


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,319,622
Number of Sequences: 59808
Number of extensions: 346060
Number of successful extensions: 737
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)