Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0831
         (650 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   1.9  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   4.5  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    22   5.9  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   7.8  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 18/78 (23%), Positives = 28/78 (35%), Gaps = 1/78 (1%)
 Frame = +3

Query: 168 SEHETEPRTAPLTDISGYKLQEKFTGG-RITILSIERSXXXXXXXXXXXARLPTLCGELT 344
           +E +   R   L    G  LQE  T G    +L+ +                  + GE++
Sbjct: 465 TELDVSKRCKDLASFMGNLLQETRTPGFGKDVLATDERSFSGSRNPLLQEHDSVMLGEIS 524

Query: 345 THADYYTRVRAITTPCYY 398
            H +YY    +  TP  Y
Sbjct: 525 PHHEYYDSKSSTETPPSY 542


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +3

Query: 318  LPTLCGELTTHADYYTRVRAITT 386
            +PT  G  TT A  Y RV A TT
Sbjct: 1259 IPTPAGLKTTGAAVYARVIAPTT 1281


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 6/21 (28%), Positives = 13/21 (61%)
 Frame = -2

Query: 265 LSIVMRPPVNFSCNLYPLMSV 203
           +++++ PP  F C + P+  V
Sbjct: 125 MTVILTPPGRFFCEVRPIKRV 145


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -2

Query: 562 TWWAHDRFPP 533
           TW AHDR+ P
Sbjct: 802 TWIAHDRYLP 811


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,298
Number of Sequences: 438
Number of extensions: 3068
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)