Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0831
         (650 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g59120.1 68416.m06591 DC1 domain-containing protein contains ...    29   2.0  
At2g26640.1 68415.m03196 beta-ketoacyl-CoA synthase, putative si...    28   6.2  

>At3g59120.1 68416.m06591 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 602

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 157 VCEHLNTRLSHALHH*PTLVD 219
           VC +L  +L HALHH P  +D
Sbjct: 357 VCANLPRKLEHALHHHPLFID 377


>At2g26640.1 68415.m03196 beta-ketoacyl-CoA synthase, putative
           similar to beta-ketoacyl-CoA synthase [Simmondsia
           chinensis][GI:1045614]
          Length = 509

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = -1

Query: 443 RKLIKIK*LSFNYTPIVTRGCYCTYSGIVIGMSRELSTKS 324
           +K +K+K +   Y  ++T G Y   S +V+ ++ ++ST S
Sbjct: 21  KKSVKLKYVKLGYHYLITHGMYLFLSPLVLVIAAQISTFS 60


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,395,437
Number of Sequences: 28952
Number of extensions: 216232
Number of successful extensions: 450
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 450
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)