Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0830
         (650 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    23   2.2  
U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    22   5.0  
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    22   5.0  
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           22   5.0  
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    21   6.7  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    21   8.8  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    21   8.8  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    21   8.8  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    21   8.8  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    21   8.8  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    21   8.8  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           21   8.8  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    21   8.8  

>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 15/63 (23%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
 Frame = +2

Query: 191 PSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKN---PLPDKDAIE-AEKEKNKFLNG 358
           P  EDV  ++ + +  +  +K  + + K+TE +E N   P+  ++A + +++E  +F   
Sbjct: 245 PKIEDVGEDEDEDTKKEDKKKKKTIKEKYTEDEELNKTKPIWTRNADDISQEEYGEFYKS 304

Query: 359 IEN 367
           + N
Sbjct: 305 LTN 307


>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 9/38 (23%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = -1

Query: 260 NQTSRYRRIKTSG-SSQWQRLQQTEAQSFHWCRRHGDS 150
           NQ   +++   +  S++   + +  A  + W + HGDS
Sbjct: 141 NQYENFQQYDNNNFSAEENSVSEPPANFYPWMKAHGDS 178


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 9/38 (23%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = -1

Query: 260 NQTSRYRRIKTSG-SSQWQRLQQTEAQSFHWCRRHGDS 150
           NQ   +++   +  S++   + +  A  + W + HGDS
Sbjct: 141 NQYENFQQYDNNNFSAEENSVSEPPANFYPWMKAHGDS 178


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 9/38 (23%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = -1

Query: 260 NQTSRYRRIKTSG-SSQWQRLQQTEAQSFHWCRRHGDS 150
           NQ   +++   +  S++   + +  A  + W + HGDS
Sbjct: 141 NQYENFQQYDNNNFSAEENSVSEPPANFYPWMKAHGDS 178


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = +3

Query: 558 FYFCFLYNG 584
           FY+C  YNG
Sbjct: 437 FYYCLAYNG 445


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 99  PQGRHXT*RVSSKASTPAVSVTST 170
           P G+  T   S   S+PA S +ST
Sbjct: 153 PPGKPATSTTSQNLSSPASSTSST 176


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 99  PQGRHXT*RVSSKASTPAVSVTST 170
           P G+  T   S   S+PA S +ST
Sbjct: 153 PPGKPATSTASQNLSSPASSTSST 176


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 99  PQGRHXT*RVSSKASTPAVSVTST 170
           P G+  T   S   S+PA S +ST
Sbjct: 153 PPGKPATSTASQNLSSPASSTSST 176


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 99  PQGRHXT*RVSSKASTPAVSVTST 170
           P G+  T   S   S+PA S +ST
Sbjct: 153 PPGKPATSTASQNLSSPASSTSST 176


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 99  PQGRHXT*RVSSKASTPAVSVTST 170
           P G+  T   S   S+PA S +ST
Sbjct: 153 PPGKPATSTASQNLSSPASSTSST 176


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 99  PQGRHXT*RVSSKASTPAVSVTST 170
           P G+  T   S   S+PA S +ST
Sbjct: 109 PPGKPATSTASQNLSSPASSTSST 132


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 99  PQGRHXT*RVSSKASTPAVSVTST 170
           P G+  T   S   S+PA S +ST
Sbjct: 153 PPGKPATSTASQNLSSPASSTSST 176


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 99  PQGRHXT*RVSSKASTPAVSVTST 170
           P G+  T   S   S+PA S +ST
Sbjct: 153 PPGKPATSTASQNLSSPASSTSST 176


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,960
Number of Sequences: 336
Number of extensions: 2959
Number of successful extensions: 13
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16760905
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)