Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0830
(650 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 29 0.58
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 28 1.3
SPBC1773.07c |sbp1|yrb1|Ran GTPase binding protein Sbp1|Schizosa... 27 1.8
SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|ch... 27 2.3
SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit ... 27 3.1
SPAC21E11.07 ||SPAC2C4.01|glycine cleavage T-protein|Schizosacch... 27 3.1
SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2... 26 4.1
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf... 26 4.1
SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyce... 26 4.1
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz... 26 5.4
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S... 26 5.4
SPBC1539.05 |cog3||Golgi transport complex subunit Cog3 |Schizos... 26 5.4
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce... 25 7.2
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe... 25 7.2
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe... 25 7.2
SPCC584.02 |cuf2||Cu metalloregulatory transcription factor Cuf2... 25 7.2
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe... 25 7.2
SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid aminotr... 25 7.2
SPBC19F8.01c |spn7|SPBC21.08c|septin Spn7|Schizosaccharomyces po... 25 7.2
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe... 25 7.2
SPAC21E11.04 |ppr1||L-azetidine-2-carboxylic acid acetyltransfer... 25 9.5
SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces p... 25 9.5
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 29.1 bits (62), Expect = 0.58
Identities = 15/55 (27%), Positives = 20/55 (36%)
Frame = +1
Query: 265 PAEAHRDSGEEPASGQRRYRSGEGKEQIPERHRELRSH*AEAHGDVRKEPAPHKG 429
P H + GE + GE P +H EL H H ++ HKG
Sbjct: 313 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPFKHHELEEHEGPEHHRGPEDKEHHKG 367
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 27.9 bits (59), Expect = 1.3
Identities = 26/91 (28%), Positives = 43/91 (47%)
Frame = +2
Query: 164 VDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDAIEAEKEKN 343
VD ++K+ S ED++ E + +L G E + SSQ + + E P P E EK
Sbjct: 145 VDEDDKL---SEEDLSKEDLETTL-KGDENYSSSQKEIYDNDETIPKPP----SPEVEKI 196
Query: 344 KFLNGIENFDPTKLKHTETCEKNPLPTKDVI 436
+ +EN T ++ +T + T D+I
Sbjct: 197 ETSTSVENAYITNSQYNDTLDMED-QTSDLI 226
>SPBC1773.07c |sbp1|yrb1|Ran GTPase binding protein
Sbp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 215
Score = 27.5 bits (58), Expect = 1.8
Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Frame = +2
Query: 194 SAEDVATEKTQ--KSLF-DGIEKFDSSQLKHTETQEKNPLPDKDAIEAEKE 337
++EDVA+++T+ K++F DG+ K ++ T ++K D+DA A E
Sbjct: 22 ASEDVASKQTEEAKAVFGDGVAKQENKSGASTNDEKKPAEGDEDAEPASPE 72
>SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 654
Score = 27.1 bits (57), Expect = 2.3
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +2
Query: 299 PLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPL 418
P D D I+ +E F NG+ +FD +K+ T K+P+
Sbjct: 159 PTCDSD-IDLIREYFSFENGVCSFDNMTVKYVSTSSKSPV 197
>SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit
Bdp1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 507
Score = 26.6 bits (56), Expect = 3.1
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +2
Query: 323 EAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPTKDVIEQEKSA 454
E EKE K ENF+ + + E E+ L +EQEK+A
Sbjct: 445 EMEKELQKIR---ENFEEERRRAIEVAEQRQLIVNHELEQEKNA 485
>SPAC21E11.07 ||SPAC2C4.01|glycine cleavage
T-protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 325
Score = 26.6 bits (56), Expect = 3.1
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Frame = +1
Query: 316 RYRSGEGKEQIPERHRELR---SH*AEAHGDVRKEPAPHKGRH*AREISLNHYFITVTRK 486
RYR+G IPE +E+ S E++ D K HKG + +E+++ Y+ VTRK
Sbjct: 182 RYRNG-----IPEGPQEIIPSISFPLESNMDWMKGIDFHKGCYLGQELTVRTYYTGVTRK 236
Query: 487 CI-SLVSPYFNIDVSQ 531
I + P + + SQ
Sbjct: 237 RIFPFIIPNYEDNPSQ 252
>SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 426
Score = 26.2 bits (55), Expect = 4.1
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -2
Query: 223 GLLSGNVFSRRKHNLFIGVDVTETAGVEAFELTLQ 119
G ++G +S +LFIGVD G+ F LQ
Sbjct: 385 GEIAGTAYSSSGDSLFIGVDDPMLGGILEFRRPLQ 419
>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1339
Score = 26.2 bits (55), Expect = 4.1
Identities = 15/65 (23%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Frame = +2
Query: 272 KHTETQEKNPLPDKDAIEAEKEKNKFL----NGIENFDPTKLKHTETCEKNPLPTKDVIE 439
+H E+ E P+ ++ + EKEK+ + +E+ P H T +K+P+ +
Sbjct: 801 RHKESSETKPVDKEEVKKNEKEKDDPMRLAQQLLESLAPDFALHENTQQKSPVEKPKKLR 860
Query: 440 QEKSA 454
+++ A
Sbjct: 861 KDRYA 865
>SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 497
Score = 26.2 bits (55), Expect = 4.1
Identities = 18/48 (37%), Positives = 23/48 (47%)
Frame = -3
Query: 228 FWVFSVATSSADGSTIFSLVSTSRRQLVLKPSS*LFRXCGDLGEVFQG 85
FW +S+ S G I SL + RQ + +PSS L VFQG
Sbjct: 83 FWGYSLTFSHEGGPYIGSLANFGLRQTLGRPSSGASSVPDILFCVFQG 130
>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 25.8 bits (54), Expect = 5.4
Identities = 16/67 (23%), Positives = 28/67 (41%)
Frame = +2
Query: 248 EKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPTK 427
+ FD +K +EK L + AE EK++ N +E+ + + N K
Sbjct: 74 KSFDEELVKFHNLEEKLQLTETKCRNAESEKSRVENELEDLTSSLFEEANRMVAN--ARK 131
Query: 428 DVIEQEK 448
+ + EK
Sbjct: 132 ETVASEK 138
>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 660
Score = 25.8 bits (54), Expect = 5.4
Identities = 10/43 (23%), Positives = 23/43 (53%)
Frame = +2
Query: 182 IVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPD 310
+ L S ED+ + T+ S+ + + +++HT + K +P+
Sbjct: 134 VALKSEEDIPSSVTRLSVVKLVNRVTYERMRHTMLEFKRSIPE 176
>SPBC1539.05 |cog3||Golgi transport complex subunit Cog3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 25.8 bits (54), Expect = 5.4
Identities = 19/86 (22%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Frame = +2
Query: 125 SQLEGFNTSCLR-DVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEK-N 298
S ++ F + L + + +K V+ + E ++ LF ++ +++ T+E N
Sbjct: 400 SYIQSFQNAILEGEREDVDKKVVEFLNPLVLELQERLLFVVQTAIETDIQRYSPTEEDLN 459
Query: 299 PLPDKDAIEAEKEKNKFLNGIENFDP 376
P+ D ++ + EK + N E DP
Sbjct: 460 PIADDKSLLFDLEKLRLNNDEEKLDP 485
>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +2
Query: 332 KEKNKFLNGIENFDPTKLKHTETCEKN 412
K + K L G ++ DP L+ + CE+N
Sbjct: 307 KMQEKELEGSDSIDPILLEKIDVCEEN 333
>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 225 WVFSVATSSADGSTIFSLVSTSRRQL 148
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 225 WVFSVATSSADGSTIFSLVSTSRRQL 148
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPCC584.02 |cuf2||Cu metalloregulatory transcription factor
Cuf2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 177
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +2
Query: 188 LPSAEDVATEKTQKSLFDGIEKFDSSQLKHTE 283
LP +ED+ + SL D + D+SQL E
Sbjct: 117 LPISEDILGYRKPLSLTDASNRIDASQLNEKE 148
>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 225 WVFSVATSSADGSTIFSLVSTSRRQL 148
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid
aminotransferase Eca39|Schizosaccharomyces pombe|chr
2|||Manual
Length = 380
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +2
Query: 224 QKSLFDGIEKFDSSQLKHTETQEKNPLPD 310
Q + G + DSS +K T +E PLP+
Sbjct: 3 QTAALHGPKPMDSSHIKVTNVKELKPLPE 31
>SPBC19F8.01c |spn7|SPBC21.08c|septin Spn7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 25.4 bits (53), Expect = 7.2
Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Frame = +2
Query: 164 VDTNEKIVLPSAEDVATEKTQKSLFD-GIEKFDSSQLKHTETQEKNPLPDKDAIEAEKEK 340
VD + S + T+ Q + G+E + H T +N LP+ E E +K
Sbjct: 353 VDNTSSLKCDSYGNTKTKTNQLNCEQIGLEVISPKEFPHRTTSSRNSLPNNTTKELEMKK 412
>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 225 WVFSVATSSADGSTIFSLVSTSRRQL 148
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPAC21E11.04 |ppr1||L-azetidine-2-carboxylic acid acetyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 209
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/45 (28%), Positives = 20/45 (44%)
Frame = +1
Query: 511 FNIDVSQDRFASSITSFIFVFCTMATLPGQWRRTXTPDFIQNSND 645
+ ID+ R + F F FCT+ +P + + PD S D
Sbjct: 52 YPIDIKMTR--NEAEDFFFKFCTVICVPVESETSPAPDLATASID 94
>SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/49 (22%), Positives = 24/49 (48%)
Frame = +2
Query: 194 SAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDAIEAEKEK 340
S++ AT+ + + + +DSS ++ K P+ + E+E E+
Sbjct: 112 SSKKKATDSVSDKIDESVASYDSSTHLRRSSRSKKPVNYNSSSESESEE 160
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,530,102
Number of Sequences: 5004
Number of extensions: 50863
Number of successful extensions: 190
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -