Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0830
(650 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF026213-7|AAB71308.2| 151|Caenorhabditis elegans Tetra thymosi... 81 7e-16
AL110471-2|CAB63306.1| 479|Caenorhabditis elegans Hypothetical ... 31 0.94
U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interactin... 29 2.2
AC006684-10|AAF39962.2| 665|Caenorhabditis elegans Hypothetical... 29 2.2
Z81562-9|CAN99693.1| 1376|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z81562-8|CAN99692.1| 1817|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z81474-10|CAN99685.1| 1376|Caenorhabditis elegans Hypothetical p... 29 2.9
Z81474-9|CAN99684.1| 1817|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z75710-1|CAB00023.1| 327|Caenorhabditis elegans Hypothetical pr... 29 2.9
AF002197-1|AAB53982.1| 383|Caenorhabditis elegans Hypothetical ... 29 3.8
AB275893-1|BAF34316.1| 383|Caenorhabditis elegans hypothetical ... 29 3.8
Z83113-10|CAI46598.1| 556|Caenorhabditis elegans Hypothetical p... 28 5.0
Z83113-9|CAB05548.2| 497|Caenorhabditis elegans Hypothetical pr... 28 5.0
Z73975-5|CAA98278.2| 556|Caenorhabditis elegans Hypothetical pr... 28 5.0
Z73975-4|CAA98279.2| 497|Caenorhabditis elegans Hypothetical pr... 28 5.0
Z48009-5|CAA88086.1| 329|Caenorhabditis elegans Hypothetical pr... 28 5.0
Z46343-6|CAL36520.1| 366|Caenorhabditis elegans Hypothetical pr... 28 5.0
Z46343-5|CAA86458.2| 356|Caenorhabditis elegans Hypothetical pr... 28 5.0
U41994-6|AAK31526.1| 1286|Caenorhabditis elegans Hypothetical pr... 28 5.0
U29488-3|AAA68772.1| 221|Caenorhabditis elegans Hypothetical pr... 28 5.0
AF022981-2|AAG24200.1| 236|Caenorhabditis elegans Hypothetical ... 28 5.0
Z78540-4|CAB01734.2| 624|Caenorhabditis elegans Hypothetical pr... 28 6.6
Z82090-3|CAD98728.1| 1516|Caenorhabditis elegans Hypothetical pr... 27 8.7
Z82090-2|CAB05007.2| 1501|Caenorhabditis elegans Hypothetical pr... 27 8.7
Z82090-1|CAB05006.1| 1508|Caenorhabditis elegans Hypothetical pr... 27 8.7
AL034393-13|CAA22317.1| 340|Caenorhabditis elegans Hypothetical... 27 8.7
AF039040-2|AAO91670.1| 615|Caenorhabditis elegans Hypothetical ... 27 8.7
AF039040-1|AAB94184.1| 553|Caenorhabditis elegans Hypothetical ... 27 8.7
>AF026213-7|AAB71308.2| 151|Caenorhabditis elegans Tetra thymosin
(four thymosin repeatprotein) protein 1 protein.
Length = 151
Score = 81.0 bits (191), Expect = 7e-16
Identities = 44/99 (44%), Positives = 58/99 (58%)
Frame = +2
Query: 155 LRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDAIEAEK 334
L+ V+T EK VLP+ EDVA EK IE FDS++L T +EK LP D I+ EK
Sbjct: 24 LKKVETTEKNVLPTKEDVAEEKQHVERIHEIEHFDSTKLHSTPVKEKIVLPSADDIKQEK 83
Query: 335 EKNKFLNGIENFDPTKLKHTETCEKNPLPTKDVIEQEKS 451
+ + + I NF LK TET EKN LP+ + +EK+
Sbjct: 84 QHLELTDKINNFPSENLKKTETIEKNVLPSPTDVAREKT 122
Score = 66.1 bits (154), Expect = 2e-11
Identities = 38/91 (41%), Positives = 48/91 (52%)
Frame = +2
Query: 128 QLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLP 307
++E F+++ L EKIVLPSA+D+ EK L D I F S LK TET EKN LP
Sbjct: 53 EIEHFDSTKLHSTPVKEKIVLPSADDIKQEKQHLELTDKINNFPSENLKKTETIEKNVLP 112
Query: 308 DKDAIEAEKEKNKFLNGIENFDPTKLKHTET 400
+ EK L +FD + L H ET
Sbjct: 113 SPTDVAREKT----LQMAASFDKSALHHVET 139
Score = 56.0 bits (129), Expect = 2e-08
Identities = 29/61 (47%), Positives = 39/61 (63%)
Frame = +2
Query: 266 QLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPTKDVIEQE 445
+LK ET EKN LP K+ + EK+ + ++ IE+FD TKL T EK LP+ D I+QE
Sbjct: 23 ELKKVETTEKNVLPTKEDVAEEKQHVERIHEIEHFDSTKLHSTPVKEKIVLPSADDIKQE 82
Query: 446 K 448
K
Sbjct: 83 K 83
Score = 37.9 bits (84), Expect = 0.006
Identities = 23/56 (41%), Positives = 29/56 (51%)
Frame = +2
Query: 119 LKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTET 286
L ++ F + L+ +T EK VLPS DVA EKT + FD S L H ET
Sbjct: 88 LTDKINNFPSENLKKTETIEKNVLPSPTDVAREKTLQM----AASFDKSALHHVET 139
>AL110471-2|CAB63306.1| 479|Caenorhabditis elegans Hypothetical
protein T06D10.2 protein.
Length = 479
Score = 30.7 bits (66), Expect = 0.94
Identities = 21/92 (22%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
Frame = +2
Query: 176 EKIVLPSAEDVATEKTQKSLFDG-IEKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFL 352
EK L + + EK +K D +E+ + K E +EK +++ ++ ++E+NK
Sbjct: 120 EKDKLAEEKRLDKEKKEKERLDKKLEEDKKKEEKRKEAEEKKKKDEEEKMKKDEERNKRK 179
Query: 353 NGIENFDPTKLKHTETCEKNPLPTKDVIEQEK 448
E K + E ++ ++ IE+ K
Sbjct: 180 KEEEEKKEAKRREDEEKKEAKRKEEEAIEERK 211
>U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interacting
protein protein16, isoform d protein.
Length = 1030
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +1
Query: 328 GEGKEQIPERHRELRSH*AEAHGDVRKEPAPHKGRH*AREISLNHY 465
G+ + Q P+ + RS + GD+ P P A EI L+HY
Sbjct: 320 GQNQPQQPQYQQHPRSQSVDPSGDMNGGPRPIHQNFSASEIELHHY 365
>AC006684-10|AAF39962.2| 665|Caenorhabditis elegans Hypothetical
protein T02H6.2 protein.
Length = 665
Score = 29.5 bits (63), Expect = 2.2
Identities = 24/83 (28%), Positives = 36/83 (43%)
Frame = +2
Query: 200 EDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPT 379
E A +K ++SL K DSS++K ++T NP D I +++ + + F
Sbjct: 537 EAEARKKVEESLK---RKLDSSKVKPSQTSSPNPY--TDTILSDEHLTQLARDLSKFKSN 591
Query: 380 KLKHTETCEKNPLPTKDVIEQEK 448
K C LP DV EK
Sbjct: 592 LAK----CFGTKLPADDVTSDEK 610
>Z81562-9|CAN99693.1| 1376|Caenorhabditis elegans Hypothetical protein
C18D4.2b protein.
Length = 1376
Score = 29.1 bits (62), Expect = 2.9
Identities = 19/75 (25%), Positives = 27/75 (36%)
Frame = +2
Query: 188 LPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIEN 367
LPS D T +K FD+ LK + L D + L+ +N
Sbjct: 1094 LPSTSDEKTPTNRKRSESSESSFDNFMLKLAIKTSLSDLKDDSLTNGASPEVDLLSTSDN 1153
Query: 368 FDPTKLKHTETCEKN 412
PT K ++ E N
Sbjct: 1154 KTPTNRKRSQVSESN 1168
>Z81562-8|CAN99692.1| 1817|Caenorhabditis elegans Hypothetical protein
C18D4.2a protein.
Length = 1817
Score = 29.1 bits (62), Expect = 2.9
Identities = 19/75 (25%), Positives = 27/75 (36%)
Frame = +2
Query: 188 LPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIEN 367
LPS D T +K FD+ LK + L D + L+ +N
Sbjct: 1094 LPSTSDEKTPTNRKRSESSESSFDNFMLKLAIKTSLSDLKDDSLTNGASPEVDLLSTSDN 1153
Query: 368 FDPTKLKHTETCEKN 412
PT K ++ E N
Sbjct: 1154 KTPTNRKRSQVSESN 1168
>Z81474-10|CAN99685.1| 1376|Caenorhabditis elegans Hypothetical
protein C18D4.2b protein.
Length = 1376
Score = 29.1 bits (62), Expect = 2.9
Identities = 19/75 (25%), Positives = 27/75 (36%)
Frame = +2
Query: 188 LPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIEN 367
LPS D T +K FD+ LK + L D + L+ +N
Sbjct: 1094 LPSTSDEKTPTNRKRSESSESSFDNFMLKLAIKTSLSDLKDDSLTNGASPEVDLLSTSDN 1153
Query: 368 FDPTKLKHTETCEKN 412
PT K ++ E N
Sbjct: 1154 KTPTNRKRSQVSESN 1168
>Z81474-9|CAN99684.1| 1817|Caenorhabditis elegans Hypothetical protein
C18D4.2a protein.
Length = 1817
Score = 29.1 bits (62), Expect = 2.9
Identities = 19/75 (25%), Positives = 27/75 (36%)
Frame = +2
Query: 188 LPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIEN 367
LPS D T +K FD+ LK + L D + L+ +N
Sbjct: 1094 LPSTSDEKTPTNRKRSESSESSFDNFMLKLAIKTSLSDLKDDSLTNGASPEVDLLSTSDN 1153
Query: 368 FDPTKLKHTETCEKN 412
PT K ++ E N
Sbjct: 1154 KTPTNRKRSQVSESN 1168
>Z75710-1|CAB00023.1| 327|Caenorhabditis elegans Hypothetical
protein D1081.2 protein.
Length = 327
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = -3
Query: 618 GXCTSPLPRQGCHCTKNKNKTCNGRRKSILTYINIKIRRY 499
G ++P P N KT GR K + YIN K+RRY
Sbjct: 24 GTSSTPTPSSSTGLLPNGKKT-KGRVKIKMEYINNKLRRY 62
>AF002197-1|AAB53982.1| 383|Caenorhabditis elegans Hypothetical
protein F20H11.5 protein.
Length = 383
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -2
Query: 172 GVDVTETAGVEAFELTLQVLWRPWGGLSG 86
G ++ G + FE L LWR +GGLSG
Sbjct: 75 GSEIDRKYGYDTFE-KLATLWREYGGLSG 102
>AB275893-1|BAF34316.1| 383|Caenorhabditis elegans hypothetical
protein protein.
Length = 383
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -2
Query: 172 GVDVTETAGVEAFELTLQVLWRPWGGLSG 86
G ++ G + FE L LWR +GGLSG
Sbjct: 75 GSEIDRKYGYDTFE-KLATLWREYGGLSG 102
>Z83113-10|CAI46598.1| 556|Caenorhabditis elegans Hypothetical
protein K08H10.2b protein.
Length = 556
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/51 (23%), Positives = 22/51 (43%)
Frame = -1
Query: 305 EAGSSPESRCASAGSNQTSRYRRIKTSGSSQWQRLQQTEAQSFHWCRRHGD 153
EA S +S + AG Y K S W+ ++ ++++ +H D
Sbjct: 51 EASDSTKSLTSDAGDAILGAYDAAKEKASDAWESTKEMVSEAYEQAEKHAD 101
>Z83113-9|CAB05548.2| 497|Caenorhabditis elegans Hypothetical
protein K08H10.2a protein.
Length = 497
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/51 (23%), Positives = 22/51 (43%)
Frame = -1
Query: 305 EAGSSPESRCASAGSNQTSRYRRIKTSGSSQWQRLQQTEAQSFHWCRRHGD 153
EA S +S + AG Y K S W+ ++ ++++ +H D
Sbjct: 51 EASDSTKSLTSDAGDAILGAYDAAKEKASDAWESTKEMVSEAYEQAEKHAD 101
>Z73975-5|CAA98278.2| 556|Caenorhabditis elegans Hypothetical
protein K08H10.2b protein.
Length = 556
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/51 (23%), Positives = 22/51 (43%)
Frame = -1
Query: 305 EAGSSPESRCASAGSNQTSRYRRIKTSGSSQWQRLQQTEAQSFHWCRRHGD 153
EA S +S + AG Y K S W+ ++ ++++ +H D
Sbjct: 51 EASDSTKSLTSDAGDAILGAYDAAKEKASDAWESTKEMVSEAYEQAEKHAD 101
>Z73975-4|CAA98279.2| 497|Caenorhabditis elegans Hypothetical
protein K08H10.2a protein.
Length = 497
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/51 (23%), Positives = 22/51 (43%)
Frame = -1
Query: 305 EAGSSPESRCASAGSNQTSRYRRIKTSGSSQWQRLQQTEAQSFHWCRRHGD 153
EA S +S + AG Y K S W+ ++ ++++ +H D
Sbjct: 51 EASDSTKSLTSDAGDAILGAYDAAKEKASDAWESTKEMVSEAYEQAEKHAD 101
>Z48009-5|CAA88086.1| 329|Caenorhabditis elegans Hypothetical
protein AH6.7 protein.
Length = 329
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -2
Query: 220 LLSGNVFSRRKHNLFIGVDVTETAGVEAFEL 128
LL N+FS H +F+G+ + E + F+L
Sbjct: 58 LLYQNLFSANIHQIFLGITIVERLNIAFFKL 88
>Z46343-6|CAL36520.1| 366|Caenorhabditis elegans Hypothetical
protein T23F11.3b protein.
Length = 366
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = -1
Query: 317 RLCPEAGSSPESRCASAGSNQTSRYRRIKTSGSSQWQRL 201
R P++GSS E+ + + + S R + TS SSQ+ ++
Sbjct: 73 RSLPKSGSSSEATSSKSSDSLVSFTRNVSTSTSSQYGKI 111
>Z46343-5|CAA86458.2| 356|Caenorhabditis elegans Hypothetical
protein T23F11.3a protein.
Length = 356
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = -1
Query: 317 RLCPEAGSSPESRCASAGSNQTSRYRRIKTSGSSQWQRL 201
R P++GSS E+ + + + S R + TS SSQ+ ++
Sbjct: 73 RSLPKSGSSSEATSSKSSDSLVSFTRNVSTSTSSQYGKI 111
>U41994-6|AAK31526.1| 1286|Caenorhabditis elegans Hypothetical
protein F59A6.5 protein.
Length = 1286
Score = 28.3 bits (60), Expect = 5.0
Identities = 20/93 (21%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Frame = +2
Query: 158 RDVDTNEKIVLPSAEDVATEKTQKSLFDGIEK-FDSSQLKHTETQEKNPLPDKDAIEAEK 334
R++ + ++ E + KT+ F+ I+K +S++ + + TQEK K I A++
Sbjct: 387 RELQSLTSLMAERDEQIEELKTKMFSFEMIKKDHESAKNELSRTQEKLDQMGKHLIMADQ 446
Query: 335 EKNKFLNGIENFDPTKLKHTETCEKNPLPTKDV 433
+ + F + E+ + ++ + E C + + +D+
Sbjct: 447 QCSTFKSLKESAEGSRRRAIEQCNEMVVRIRDL 479
>U29488-3|AAA68772.1| 221|Caenorhabditis elegans Hypothetical
protein C56C10.4 protein.
Length = 221
Score = 28.3 bits (60), Expect = 5.0
Identities = 17/52 (32%), Positives = 21/52 (40%)
Frame = -1
Query: 368 SSRCRSGICSFPSPLR*RLCPEAGSSPESRCASAGSNQTSRYRRIKTSGSSQ 213
S C G C P P C AG P C S G +T R+ +G+ Q
Sbjct: 25 SGTCGLGPCFNPLPALPSPCASAGCGPGFSCGSYGCYRTK--ARVHAAGTHQ 74
>AF022981-2|AAG24200.1| 236|Caenorhabditis elegans Hypothetical
protein W03F9.2a protein.
Length = 236
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = +2
Query: 272 KHTETQEKNPLPDKDAIEAEKEKNKFLNGIE--NFD 373
KHTET+++ P +K A+K N L +E N+D
Sbjct: 192 KHTETEKEAPPQEKSVTNAQKPGNPALLSLESRNYD 227
>Z78540-4|CAB01734.2| 624|Caenorhabditis elegans Hypothetical
protein C33G3.6 protein.
Length = 624
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/62 (24%), Positives = 28/62 (45%)
Frame = +2
Query: 245 IEKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPT 424
IE+F K T ++N ++ E++ E+ +LN I +F + H LP+
Sbjct: 98 IEQFFGENQKSTRNSDQNAKNHEEDPESDDEETAYLNLIRSFKKEESMHDLKNASGKLPS 157
Query: 425 KD 430
+
Sbjct: 158 SN 159
>Z82090-3|CAD98728.1| 1516|Caenorhabditis elegans Hypothetical
protein ZK337.1c protein.
Length = 1516
Score = 27.5 bits (58), Expect = 8.7
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -2
Query: 142 EAFELTLQVLWRPWGGLSGRECHS 71
EA + + +WRPW G+ G + S
Sbjct: 665 EAIDRKKRSIWRPWWGIGGSDAQS 688
>Z82090-2|CAB05007.2| 1501|Caenorhabditis elegans Hypothetical
protein ZK337.1b protein.
Length = 1501
Score = 27.5 bits (58), Expect = 8.7
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -2
Query: 142 EAFELTLQVLWRPWGGLSGRECHS 71
EA + + +WRPW G+ G + S
Sbjct: 665 EAIDRKKRSIWRPWWGIGGSDAQS 688
>Z82090-1|CAB05006.1| 1508|Caenorhabditis elegans Hypothetical
protein ZK337.1a protein.
Length = 1508
Score = 27.5 bits (58), Expect = 8.7
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -2
Query: 142 EAFELTLQVLWRPWGGLSGRECHS 71
EA + + +WRPW G+ G + S
Sbjct: 665 EAIDRKKRSIWRPWWGIGGSDAQS 688
>AL034393-13|CAA22317.1| 340|Caenorhabditis elegans Hypothetical
protein Y18D10A.17 protein.
Length = 340
Score = 27.5 bits (58), Expect = 8.7
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Frame = +2
Query: 137 GFNTSCLRDVDTNEKIVLPSAEDV--ATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPD 310
G N + V+ EK+ S D A EK Q+ L D +EK + E +EK
Sbjct: 169 GHNNYGVPRVNHREKLKFESDFDFEKANEKFQEVLVDNLEKLNIEDKAEPEVEEK----- 223
Query: 311 KDAIEAEKEKNKFLN 355
KDA +K+ + F N
Sbjct: 224 KDAAFYDKKTSFFDN 238
>AF039040-2|AAO91670.1| 615|Caenorhabditis elegans Hypothetical
protein T22B11.4b protein.
Length = 615
Score = 27.5 bits (58), Expect = 8.7
Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Frame = +2
Query: 197 AEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLN-GIENFD 373
AE+ AT Q +G ++ E +EK + E+ +E++ L +E+ +
Sbjct: 310 AEETATV-VQVDKDEGDVSEETGGTNFFEEEEKKEEGETKKEESSEEEDGVLKVNLEDIE 368
Query: 374 PTKLKHTETCEKNPLPTKDVIEQEKS 451
PTKLK E +K ++ ++E++
Sbjct: 369 PTKLKSQEDAKKKEGDEEEEKDEEEA 394
>AF039040-1|AAB94184.1| 553|Caenorhabditis elegans Hypothetical
protein T22B11.4a protein.
Length = 553
Score = 27.5 bits (58), Expect = 8.7
Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Frame = +2
Query: 197 AEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLN-GIENFD 373
AE+ AT Q +G ++ E +EK + E+ +E++ L +E+ +
Sbjct: 310 AEETATV-VQVDKDEGDVSEETGGTNFFEEEEKKEEGETKKEESSEEEDGVLKVNLEDIE 368
Query: 374 PTKLKHTETCEKNPLPTKDVIEQEKS 451
PTKLK E +K ++ ++E++
Sbjct: 369 PTKLKSQEDAKKKEGDEEEEKDEEEA 394
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,091,311
Number of Sequences: 27780
Number of extensions: 293806
Number of successful extensions: 1074
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1017
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1072
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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