Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0830
(650 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g36520.1 68417.m05185 trichohyalin-related low similarity to ... 38 0.004
At3g57780.1 68416.m06436 expressed protein 31 0.66
At2g02720.1 68415.m00214 pectate lyase family protein similar to... 31 0.66
At4g08710.1 68417.m01439 hypothetical protein contains Pfam prof... 30 1.2
At3g28770.1 68416.m03591 expressed protein 30 1.2
At5g64420.1 68418.m08092 DNA polymerase V family contains Pfam d... 29 2.7
At5g45520.1 68418.m05591 hypothetical protein 29 2.7
At3g54290.1 68416.m06000 expressed protein contains Pfam PF03794... 29 3.5
At2g22795.1 68415.m02704 expressed protein 28 4.7
At1g32750.1 68414.m04038 HAC13 protein (HAC13) identical to HAC1... 28 4.7
At5g06430.1 68418.m00720 thioredoxin-related contains weak simil... 28 6.2
At3g43390.1 68416.m04592 hypothetical protein similar to At3g243... 28 6.2
At1g11790.1 68414.m01353 prephenate dehydratase family protein s... 28 6.2
At4g05280.1 68417.m00799 Ulp1 protease family protein contains P... 27 8.2
At3g19840.1 68416.m02513 FF domain-containing protein / WW domai... 27 8.2
>At4g36520.1 68417.m05185 trichohyalin-related low similarity to
SP|Q07283 Trichohyalin {Homo sapiens}
Length = 1400
Score = 38.3 bits (85), Expect = 0.004
Identities = 26/114 (22%), Positives = 50/114 (43%), Gaps = 1/114 (0%)
Frame = +2
Query: 158 RDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDAIEAEKE 337
R+ + NE+ + + E E+ K+ + EK Q+K + +E+N K+ +E +
Sbjct: 744 REKEENERRIKEAREKAELEQRLKATLEQEEK--ERQIKERQEREENERRAKEVLEQAEN 801
Query: 338 KNKFLNGIENFD-PTKLKHTETCEKNPLPTKDVIEQEKSAXXXXXXXXXANVSR 496
+ K +E + +LK T E+N ++ IE E+ A + R
Sbjct: 802 ERKLKEALEQKENERRLKETREKEENKKKLREAIELEEKEKRLIEAFERAEIER 855
Score = 30.7 bits (66), Expect = 0.88
Identities = 21/95 (22%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
Frame = +2
Query: 167 DTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNK 346
+ NE+ E E+ K + +K + +LK T +E+N ++AIE E+++ +
Sbjct: 786 EENERRAKEVLEQAENERKLKEALE--QKENERRLKETREKEENKKKLREAIELEEKEKR 843
Query: 347 FLNGIENFD-PTKLKHTETCEKNPLPTKDVIEQEK 448
+ E + +LK E+ + ++ E+E+
Sbjct: 844 LIEAFERAEIERRLKEDLEQEEMRMRLQEAKERER 878
>At3g57780.1 68416.m06436 expressed protein
Length = 670
Score = 31.1 bits (67), Expect = 0.66
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +2
Query: 221 TQKSLFDGIEKFDSSQLKHTETQEK-NPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTE 397
TQ L D + + + TE +E N L D E EKE++K L+ I + + E
Sbjct: 58 TQSKLSDDDDHAVNDSSEKTEKEETINGLACDDEDEEEKEESKELDAIAHEKTDSVSSPE 117
Query: 398 TCE 406
TCE
Sbjct: 118 TCE 120
>At2g02720.1 68415.m00214 pectate lyase family protein similar to
pectate lyase P59 SP:P15722 from [Lycopersicon
esculentum]
Length = 455
Score = 31.1 bits (67), Expect = 0.66
Identities = 17/58 (29%), Positives = 24/58 (41%)
Frame = +2
Query: 272 KHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPTKDVIEQE 445
K +E P P+ + + EK+ FLNG K KNP+P K I +
Sbjct: 375 KQVTKREYTPYPEWKSWNWQSEKDYFLNGAYFVQSGKANAWSATPKNPIPRKFAIRPQ 432
>At4g08710.1 68417.m01439 hypothetical protein contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 715
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +2
Query: 200 EDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDAIEAEKEKN 343
EDV EK D +++ D Q + ++EK +KD E EKEK+
Sbjct: 642 EDVVQEKDGDQEEDVVQEKDGDQEEDGVSKEKEQEKEKDPKEKEKEKD 689
>At3g28770.1 68416.m03591 expressed protein
Length = 2081
Score = 30.3 bits (65), Expect = 1.2
Identities = 21/81 (25%), Positives = 34/81 (41%)
Frame = +2
Query: 170 TNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKF 349
TNE V E+V K + + EK +S K ET++ L + + KE++
Sbjct: 763 TNENRVRNKEENVQGNKKESEKVEKGEKKESKDAKSVETKDNKKLSSTENRDEAKERSGE 822
Query: 350 LNGIENFDPTKLKHTETCEKN 412
N + + + E EKN
Sbjct: 823 DNKEDKEESKDYQSVEAKEKN 843
Score = 28.3 bits (60), Expect = 4.7
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = +2
Query: 218 KTQKSLFDGIEKFDSSQLKHTETQEKNPLPD-KDAIEAEKEKNKFLNGIENFDPTKLKHT 394
KT ++ E+ K +E EK + KDA E + NK L+ EN D K +
Sbjct: 762 KTNENRVRNKEENVQGNKKESEKVEKGEKKESKDAKSVETKDNKKLSSTENRDEAKERSG 821
Query: 395 ETCEKNPLPTKD 430
E +++ +KD
Sbjct: 822 EDNKEDKEESKD 833
>At5g64420.1 68418.m08092 DNA polymerase V family contains Pfam
domain PF04931: DNA polymerase V
Length = 1306
Score = 29.1 bits (62), Expect = 2.7
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +2
Query: 278 TETQEKNPLPDKDAIEAEKEKNKFLNGIENFD 373
TE E + LPD ++ +K K + +N + N+D
Sbjct: 12 TELVENDNLPDSSIVKKKKSKTEKMNTVANYD 43
>At5g45520.1 68418.m05591 hypothetical protein
Length = 1167
Score = 29.1 bits (62), Expect = 2.7
Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Frame = +2
Query: 221 TQKSLFDGIEKFDSSQLKHTET-QEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTE 397
T K L D +E+ D + +T +E+ ++ + + ++ +N N + K KH E
Sbjct: 575 TDKKLKDLMEREDDQVQNYGQTSKEEKGNVEETGKQEDGDQGDGINEEANLEDGK-KHDE 633
Query: 398 TCEKNPLPTKDVIEQEK 448
E+ L + +V+E+EK
Sbjct: 634 GKEERSLKSDEVVEEEK 650
>At3g54290.1 68416.m06000 expressed protein contains Pfam PF03794:
Domain of Unknown function
Length = 350
Score = 28.7 bits (61), Expect = 3.5
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Frame = +2
Query: 227 KSLFDGIEKFDSSQLK---HTETQEKNPLPDKDAIEAEKEKNKFL 352
++LF +F S Q+ H E +EK+ LP +A E KEK K L
Sbjct: 252 EALFSLASRFKSLQMMCKTHFEEEEKDLLPMVEAAEMGKEKQKKL 296
>At2g22795.1 68415.m02704 expressed protein
Length = 734
Score = 28.3 bits (60), Expect = 4.7
Identities = 21/98 (21%), Positives = 44/98 (44%)
Frame = +2
Query: 158 RDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDAIEAEKE 337
++ + EK+ S E ++T EK +SS L+ T+ +E +++ EK
Sbjct: 469 KETEAKEKVESSSQEKNEDKET--------EKIESSFLEETKEKEDETKEKEESSSQEKT 520
Query: 338 KNKFLNGIENFDPTKLKHTETCEKNPLPTKDVIEQEKS 451
+ K +N + + + T+ E + ++ QE+S
Sbjct: 521 EEKETETKDNEESSSQEETKDKENEKIEKEEASSQEES 558
Score = 27.9 bits (59), Expect = 6.2
Identities = 23/100 (23%), Positives = 48/100 (48%), Gaps = 5/100 (5%)
Frame = +2
Query: 167 DTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNK 346
+ NE E E+T++ + EK +SS + TE +E ++++ E+ K+K
Sbjct: 483 EKNEDKETEKIESSFLEETKEKEDETKEKEESSSQEKTEEKETETKDNEESSSQEETKDK 542
Query: 347 FLNGIE-----NFDPTKLKHTETCEKNPLPTKDVIEQEKS 451
IE + + +K TET EK +++ +++++
Sbjct: 543 ENEKIEKEEASSQEESKENETETKEKEESSSQEETKEKEN 582
Score = 27.5 bits (58), Expect = 8.2
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Frame = +2
Query: 200 EDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDAIEAEKEK-NKFLNGIENFDP 376
ED EK + S + E+ ++ + E+ + DK+ + EKE+ + EN
Sbjct: 505 EDETKEKEESSSQEKTEEKETETKDNEESSSQEETKDKENEKIEKEEASSQEESKENETE 564
Query: 377 TKLK-HTETCEKNPLPTKDVIEQEKSA 454
TK K + + E+ + IE+E+SA
Sbjct: 565 TKEKEESSSQEETKEKENEKIEKEESA 591
>At1g32750.1 68414.m04038 HAC13 protein (HAC13) identical to HAC13
[Arabidopsis thaliana] gi|21105767|gb|AAM34782; contains
Pfam domains, PF00439: Bromodomain and PF00240:
Ubiquitin family
Length = 1919
Score = 28.3 bits (60), Expect = 4.7
Identities = 23/94 (24%), Positives = 42/94 (44%)
Frame = +2
Query: 164 VDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDAIEAEKEKN 343
V + E +LP E +T SL FD E QE+ P + ++E EK +
Sbjct: 112 VVSEEDHLLPKKEYFSTAVALGSLKSRASVFDDEDYDEEEEQEEEQAPVEKSLETEKREP 171
Query: 344 KFLNGIENFDPTKLKHTETCEKNPLPTKDVIEQE 445
L + + + + + +++ + T+DV E+E
Sbjct: 172 VVLKEDKALEYEE-EASILDKEDHMDTEDVQEEE 204
>At5g06430.1 68418.m00720 thioredoxin-related contains weak
similarity to Swiss-Prot:Q9SEU7 thioredoxin M-type 3,
chloroplast precursor (TRX-M3) [Arabidopsis thaliana]
Length = 194
Score = 27.9 bits (59), Expect = 6.2
Identities = 20/71 (28%), Positives = 27/71 (38%), Gaps = 2/71 (2%)
Frame = -1
Query: 392 CASA*WD--RSSRCRSGICSFPSPLR*RLCPEAGSSPESRCASAGSNQTSRYRRIKTSGS 219
C WD + + S +C F P R GS S S G N R ++ S S
Sbjct: 19 CLKWPWDSNKQPKSSSSVCDFQGPWLFRSMQTIGSIALSSLTSFGQNPNFRPKKKPLSSS 78
Query: 218 SQWQRLQQTEA 186
Q + Q+ A
Sbjct: 79 EQGEAEQRAFA 89
>At3g43390.1 68416.m04592 hypothetical protein similar to At3g24380,
At5g36840, At5g35010, At3g42740, At4g05290, At2g14770,
At2g05560, At4g08880, At1g34730, At1g27790, At1g34740,
At1g27780, At5g36850, At3g42730, At1g52020, At3g24390,
At4g05280, At1g25886, At4g03300
Length = 1113
Score = 27.9 bits (59), Expect = 6.2
Identities = 16/62 (25%), Positives = 27/62 (43%)
Frame = +2
Query: 266 QLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPTKDVIEQE 445
QL+ T+ + K P E +K K D K ++ E C P+P + ++E
Sbjct: 413 QLEETDVKRKRNAPGPSPKEPAMKKQK-----SEMDCDKEENAEDCFGEPVPERFIVEMR 467
Query: 446 KS 451
+S
Sbjct: 468 RS 469
>At1g11790.1 68414.m01353 prephenate dehydratase family protein
similar to gi|2392772 and is a member of the PF|00800
Prephenate dehydratase family. ESTs gb|T21562 and
gb|T21062 come from this gene
Length = 392
Score = 27.9 bits (59), Expect = 6.2
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = -1
Query: 350 GICSFPSPLR*RLCP-EAGSSPESRCASAGSNQTSRYRRIKTSGSSQWQRLQQTEAQSFH 174
G+ F + R R C E SS R +A + R +K S S + Q+T++ SFH
Sbjct: 23 GLAEFDADKRRRFCLWECSSSASQRAVTAIEGEIPFSRELKKS-SDELGLTQETQSLSFH 81
>At4g05280.1 68417.m00799 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At3g24380, At5g36840,
At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
At2g05560, At4g08880, At1g34730, At1g27790, At1g34740,
At1g27780, At5g36850, At3g42730, At1g52020, At3g24390,
At1g25886, At4g03300
Length = 1312
Score = 27.5 bits (58), Expect = 8.2
Identities = 16/62 (25%), Positives = 27/62 (43%)
Frame = +2
Query: 266 QLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPTKDVIEQE 445
QL+ T+ + K P E +K I D K ++ E C P+P + ++E
Sbjct: 359 QLEETDVKRKRNAPGPSPKEPAMKKQ-----ISEMDCDKEENAEDCFGEPVPERFIVEMR 413
Query: 446 KS 451
+S
Sbjct: 414 RS 415
>At3g19840.1 68416.m02513 FF domain-containing protein / WW
domain-containing protein weak similarity to
transcription factor CA150b [Mus musculus] GI:6329166;
contains Pfam profiles PF01846: FF domain, PF00397: WW
domain
Length = 743
Score = 27.5 bits (58), Expect = 8.2
Identities = 16/60 (26%), Positives = 25/60 (41%)
Frame = +1
Query: 286 SGEEPASGQRRYRSGEGKEQIPERHRELRSH*AEAHGDVRKEPAPHKGRH*AREISLNHY 465
S E+ A R + + K + ER + SH ++ +R EP H RE+ Y
Sbjct: 489 SAEQKAQEIRAAAASDFKTMLREREISINSHWSKVKDSLRNEPRYRSVAHEDREVFYYEY 548
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,364,088
Number of Sequences: 28952
Number of extensions: 276462
Number of successful extensions: 1001
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1001
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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