Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0826
         (800 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|...    27   2.3  
SPCC330.19c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    27   3.1  
SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces pombe...    27   3.1  
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces...    26   5.4  
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    26   5.4  
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa...    25   9.5  

>SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 402

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 21/78 (26%), Positives = 44/78 (56%), Gaps = 8/78 (10%)
 Frame = +1

Query: 172 WLLRTRAS-SGQYENYYLSRIN-ISSAKTDGGNISTAAPQSDHYKDLIKIEIAM-RRVEE 342
           W+L TR   + + E Y+ ++++ + ++ +D  N S + P++  Y  L K+E  M + V +
Sbjct: 218 WVLLTRKEWTNREEKYFENQLHLVKASSSDVSNSSNSFPEN-RYPKLTKVEKQMTKSVSK 276

Query: 343 NSRRLK-----EYTKSIL 381
            S+  K     ++TK++L
Sbjct: 277 TSQTDKDEDNLDFTKNLL 294


>SPCC330.19c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 90

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 9/29 (31%), Positives = 20/29 (68%)
 Frame = -1

Query: 146 VTIKVNIRRVRRNTVLGDVQLISLFVYFC 60
           ++I++NI  ++ N ++  + L+ LF +FC
Sbjct: 19  LSIRINIFGLQLNIIINLIPLVLLFAFFC 47


>SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 594

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +2

Query: 413 FYSKKVREWTKGDWAENISSPSTKSIYE 496
           FYS++ + +    W E  SS +TK++YE
Sbjct: 255 FYSEEHKNYAGVYWGEVSSSETTKAVYE 282


>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 967

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = +1

Query: 409 CVLFKESERMDKGRLGGKHQQSVDEEYIRSLREQKM 516
           CV  ++ E + K     +H+ + D  Y+R LR  ++
Sbjct: 884 CVFAEDKELLAKATCPPQHKDTYDRGYVRGLRTLRL 919


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1727

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = +1

Query: 274 AAPQSDHYKDLIKIEIAMRRVEENSRRL 357
           A+ QSDH K   K+E++ R+V++  ++L
Sbjct: 206 ASLQSDHSKVCEKLEVSSRQVQDLEKKL 233


>SPCC576.15c |ksg1||serine/threonine protein kinase
           Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 592

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = -1

Query: 782 YTFTGIQNIYIFQRLTHQL*ILSFIINSMKLNPECSMFYINNLAKS-DYV 636
           YTF    N+Y    L     +L +I    + N  C+ +Y   +  S DY+
Sbjct: 165 YTFQDAHNLYFVLSLARNGELLDYINKLGRFNEICAQYYAALIVDSIDYM 214


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,164,281
Number of Sequences: 5004
Number of extensions: 63729
Number of successful extensions: 146
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)