Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0826
         (800 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0372 + 2684208-2684390,2684867-2684968,2685197-2685290,268...    29   4.3  
09_02_0133 + 4707944-4708308,4708320-4708534,4708626-4708672,470...    29   5.7  
06_01_1009 - 7859357-7859405,7860476-7860660,7860747-7860821,786...    29   5.7  
01_06_1414 + 37167849-37168820,37168909-37168980,37169104-371691...    28   7.5  
07_01_0566 + 4207894-4207974,4208090-4208144,4208671-4208759,420...    28   9.9  

>06_01_0372 +
           2684208-2684390,2684867-2684968,2685197-2685290,
           2685450-2685532,2685684-2685773,2686931-2687173
          Length = 264

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -3

Query: 105 SARGRTTHITICLLLRTHTSRPITRWRSTRSLRA 4
           + RGR+T I +C L++     P T +   RS RA
Sbjct: 141 AGRGRSTTIVLCYLVKYKNMTPSTAFEHVRSKRA 174


>09_02_0133 +
           4707944-4708308,4708320-4708534,4708626-4708672,
           4708997-4709393,4710042-4710608,4710708-4710838,
           4711274-4711747
          Length = 731

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +1

Query: 397 KSLWCVLFKESERMDKGRLGGKHQQSVDEEYIRSLREQKMREALI 531
           + L+ ++    E  DK  L  KH++S+ E+Y R  R   + E ++
Sbjct: 460 RRLFAIILAFCEVTDKCALCDKHKESMSEDYARDNRNPMLVEQMV 504


>06_01_1009 -
           7859357-7859405,7860476-7860660,7860747-7860821,
           7860852-7861313,7861411-7861482,7861629-7861775,
           7861888-7862043,7862136-7862306,7862505-7862675,
           7862763-7862828,7864302-7864387,7864505-7864667
          Length = 600

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +3

Query: 435 NGQREIGRKTSAVRRRRVYTKFKGTKNEGGFDTSKASWDASPPKT 569
           NG   + R T AVR       +KG  +EG  + + ++ D S  +T
Sbjct: 446 NGAHLLNRSTDAVRDCETNDSWKGNADEGTIENTNSNTDESNKET 490


>01_06_1414 +
           37167849-37168820,37168909-37168980,37169104-37169133,
           37169276-37169368
          Length = 388

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 13/56 (23%), Positives = 32/56 (57%)
 Frame = +1

Query: 307 IKIEIAMRRVEENSRRLKEYTKSILWDNKDKSLWCVLFKESERMDKGRLGGKHQQS 474
           +++E  +  +++ + RLKE  K++L   K   +  ++ +  E+M+  R G + ++S
Sbjct: 328 VELEAELNYLKQENARLKEAEKTVLLTKKQMLVEKMMEQSKEKMNANRGGSQLRRS 383


>07_01_0566 +
           4207894-4207974,4208090-4208144,4208671-4208759,
           4209742-4209794,4209966-4210120,4210201-4210528,
           4210618-4210730,4211394-4211538,4211951-4212259,
           4212340-4212420,4212989-4213349
          Length = 589

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = +3

Query: 474 RRRRVYTKFKGTKNEGGFDTSKASWDASPPKTGFTSEFSIHQINR*NRTFHISK 635
           + ++   K +GTK +       +S D+   KTG +S  S  +  R  RT H SK
Sbjct: 237 KHKKTKRKSRGTKRKSKRSYRSSSDDSDSSKTGGSSSDSESEGRRTTRTKHSSK 290


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,499,125
Number of Sequences: 37544
Number of extensions: 376375
Number of successful extensions: 958
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 958
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)