Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0826
         (800 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30317| Best HMM Match : Protamine_3 (HMM E-Value=0.091)             30   1.9  
SB_9280| Best HMM Match : 7tm_1 (HMM E-Value=0.0027)                   29   3.3  
SB_5075| Best HMM Match : 7tm_1 (HMM E-Value=0)                        29   4.4  
SB_52289| Best HMM Match : SH3_1 (HMM E-Value=3.5e-13)                 28   7.7  

>SB_30317| Best HMM Match : Protamine_3 (HMM E-Value=0.091)
          Length = 761

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 8/64 (12%)
 Frame = -2

Query: 556 DASHDALDVSKPPSFFV--------PLNFVYTLRRRTADVFRPISLCPFSHFL*IKHTKE 401
           D SH     S+ P+ +         P+  VY ++RR      P SLC  SH   + HT +
Sbjct: 533 DRSHKTAGASRSPTLYFSETCSSSSPIREVYVMKRRLR--LSPFSLCYMSHTALLVHTAD 590

Query: 400 TYPC 389
              C
Sbjct: 591 NKDC 594


>SB_9280| Best HMM Match : 7tm_1 (HMM E-Value=0.0027)
          Length = 292

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 21/62 (33%), Positives = 34/62 (54%)
 Frame = -1

Query: 782 YTFTGIQNIYIFQRLTHQL*ILSFIINSMKLNPECSMFYINNLAKSDYVF*NMKRTILSI 603
           +T+     I I    T+ L IL+FIIN   L    + ++I NLA SD++F ++   + + 
Sbjct: 17  FTYAATYIICIAAATTNALIILAFIINE-HLRKR-NTYFILNLAISDFLFGSVLAPMFAE 74

Query: 602 YL 597
           YL
Sbjct: 75  YL 76


>SB_5075| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 363

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = -3

Query: 342 FFNATHCYFNLYQILVMIRLRRRSRDVTPVRFRGAYINSRQVIILILSG 196
           F N +HCY N   +   +  ++  R   PV+F   Y+    VI ++ SG
Sbjct: 173 FNNESHCYMNWANLAASLDNKQSQRIYYPVQFVLLYLLPLLVISVLYSG 221


>SB_52289| Best HMM Match : SH3_1 (HMM E-Value=3.5e-13)
          Length = 803

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 12/46 (26%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
 Frame = +1

Query: 187 RASSGQYENYYLSRINISSAKTDGGNISTAAP---QSDHYKDLIKI 315
           R S   YENYY+ + +  ++   GG+++   P      H +D++++
Sbjct: 273 RPSHIDYENYYMVQSSQKTSPLSGGSVNIGGPIPGSLTHSRDMVQV 318


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,024,878
Number of Sequences: 59808
Number of extensions: 456116
Number of successful extensions: 987
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 987
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2215746665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)