Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0826
         (800 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC033637-1|AAH33637.1|  614|Homo sapiens SSX2IP protein protein.       31   4.8  
AY367055-1|AAQ72373.1|  614|Homo sapiens synovial sarcoma, X bre...    31   4.8  
AB023140-1|BAA76767.2|  626|Homo sapiens KIAA0923 protein protein.     31   4.8  
BC064389-1|AAH64389.1|  559|Homo sapiens SSX2IP protein protein.       31   6.4  

>BC033637-1|AAH33637.1|  614|Homo sapiens SSX2IP protein protein.
          Length = 614

 Score = 31.1 bits (67), Expect = 4.8
 Identities = 25/103 (24%), Positives = 47/103 (45%), Gaps = 5/103 (4%)
 Frame = +1

Query: 235 ISSAKTDGGNISTAAPQSDHYKDLIKIEIAMRRVEE---NSRRLKEYTKSILWDNKDKSL 405
           +S    +G N      + DH ++  K+E+ +++ +E     ++L +   +  +D+   SL
Sbjct: 360 VSKVHLEGFNDEDVISRQDHEQETEKLELEIQQCKEMIKTQQQLLQQQLATAYDDDTTSL 419

Query: 406 W--CVLFKESERMDKGRLGGKHQQSVDEEYIRSLREQKMREAL 528
              C L +E ER+ +     K Q+   E   RS  E  +R  L
Sbjct: 420 LRDCYLLEEKERLKEEWSLFKEQKKNFERERRSFTEAAIRLGL 462


>AY367055-1|AAQ72373.1|  614|Homo sapiens synovial sarcoma, X
           breakpoint 2 interacting protein protein.
          Length = 614

 Score = 31.1 bits (67), Expect = 4.8
 Identities = 25/103 (24%), Positives = 47/103 (45%), Gaps = 5/103 (4%)
 Frame = +1

Query: 235 ISSAKTDGGNISTAAPQSDHYKDLIKIEIAMRRVEE---NSRRLKEYTKSILWDNKDKSL 405
           +S    +G N      + DH ++  K+E+ +++ +E     ++L +   +  +D+   SL
Sbjct: 360 VSKVHLEGFNDEDVISRQDHEQETEKLELEIQQCKEMIKTQQQLLQQQLATAYDDDTTSL 419

Query: 406 W--CVLFKESERMDKGRLGGKHQQSVDEEYIRSLREQKMREAL 528
              C L +E ER+ +     K Q+   E   RS  E  +R  L
Sbjct: 420 LRDCYLLEEKERLKEEWSLFKEQKKNFERERRSFTEAAIRLGL 462


>AB023140-1|BAA76767.2|  626|Homo sapiens KIAA0923 protein protein.
          Length = 626

 Score = 31.1 bits (67), Expect = 4.8
 Identities = 25/103 (24%), Positives = 47/103 (45%), Gaps = 5/103 (4%)
 Frame = +1

Query: 235 ISSAKTDGGNISTAAPQSDHYKDLIKIEIAMRRVEE---NSRRLKEYTKSILWDNKDKSL 405
           +S    +G N      + DH ++  K+E+ +++ +E     ++L +   +  +D+   SL
Sbjct: 372 VSKVHLEGFNDEDVISRQDHEQETEKLELEIQQCKEMIKTQQQLLQQQLATAYDDDTTSL 431

Query: 406 W--CVLFKESERMDKGRLGGKHQQSVDEEYIRSLREQKMREAL 528
              C L +E ER+ +     K Q+   E   RS  E  +R  L
Sbjct: 432 LRDCYLLEEKERLKEEWSLFKEQKKNFERERRSFTEAAIRLGL 474


>BC064389-1|AAH64389.1|  559|Homo sapiens SSX2IP protein protein.
          Length = 559

 Score = 30.7 bits (66), Expect = 6.4
 Identities = 24/102 (23%), Positives = 47/102 (46%), Gaps = 4/102 (3%)
 Frame = +1

Query: 235 ISSAKTDGGNISTAAPQSDHYKDLIKIEIAMRRVEENSRRLKEYTKSI--LWDNKDKSLW 408
           +S    +G N      + DH ++  K+E+ +++ +E  +  ++  + +   +D+   SL 
Sbjct: 360 VSKVHLEGFNDEDVISRQDHEQETEKLELEIQQCKEMIKTQQQLLQQLATAYDDDTTSLL 419

Query: 409 --CVLFKESERMDKGRLGGKHQQSVDEEYIRSLREQKMREAL 528
             C L +E ER+ +     K Q+   E   RS  E  +R  L
Sbjct: 420 RDCYLLEEKERLKEEWSLFKEQKKNFERERRSFTEAAIRLGL 461


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,460,265
Number of Sequences: 237096
Number of extensions: 2054740
Number of successful extensions: 5535
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5535
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9869080686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)