Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0826
         (800 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RS...    31   0.67 
At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RS...    31   0.67 
At1g45150.1 68414.m05176 expressed protein                             31   1.2  
At3g50370.1 68416.m05508 expressed protein                             30   2.1  
At5g47780.1 68418.m05902 glycosyl transferase family 8 protein c...    28   6.3  
At2g21800.1 68415.m02591 expressed protein                             28   6.3  
At1g34060.1 68414.m04222 alliinase family protein contains Pfam ...    28   6.3  
At3g10180.1 68416.m01219 kinesin motor protein-related similar t...    28   8.3  

>At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RSP40
           (RSP40) identical to SP|P92965 Arginine/serine-rich
           splicing factor RSP40 {Arabidopsis thaliana}
          Length = 309

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 23/77 (29%), Positives = 35/77 (45%)
 Frame = +3

Query: 447 EIGRKTSAVRRRRVYTKFKGTKNEGGFDTSKASWDASPPKTGFTSEFSIHQINR*NRTFH 626
           E GRK   +R     ++  G K  GG  + ++S    P KT F   F         RT  
Sbjct: 18  EFGRKGRRLRVEWTKSERGGDKRSGG-GSRRSSSSMRPSKTLFVINFDADN----TRTRD 72

Query: 627 ISKNVV*FGKIINIKHR 677
           + K+   +GKI+N++ R
Sbjct: 73  LEKHFEPYGKIVNVRIR 89


>At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RSP40
           (RSP40) identical to SP|P92965 Arginine/serine-rich
           splicing factor RSP40 {Arabidopsis thaliana}
          Length = 350

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 23/77 (29%), Positives = 35/77 (45%)
 Frame = +3

Query: 447 EIGRKTSAVRRRRVYTKFKGTKNEGGFDTSKASWDASPPKTGFTSEFSIHQINR*NRTFH 626
           E GRK   +R     ++  G K  GG  + ++S    P KT F   F         RT  
Sbjct: 59  EFGRKGRRLRVEWTKSERGGDKRSGG-GSRRSSSSMRPSKTLFVINFDADN----TRTRD 113

Query: 627 ISKNVV*FGKIINIKHR 677
           + K+   +GKI+N++ R
Sbjct: 114 LEKHFEPYGKIVNVRIR 130


>At1g45150.1 68414.m05176 expressed protein
          Length = 643

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 20/53 (37%), Positives = 27/53 (50%)
 Frame = +1

Query: 163 SVVWLLRTRASSGQYENYYLSRINISSAKTDGGNISTAAPQSDHYKDLIKIEI 321
           SV+W+      +GQ    Y   I IS+ KTDGG  S  A    H KD + +E+
Sbjct: 154 SVIWV-SIDVPTGQPPGQYEGEIIISAMKTDGGGSSHLA---KHEKDQLCVEL 202


>At3g50370.1 68416.m05508 expressed protein
          Length = 2179

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 17/65 (26%), Positives = 33/65 (50%)
 Frame = +1

Query: 328 RRVEENSRRLKEYTKSILWDNKDKSLWCVLFKESERMDKGRLGGKHQQSVDEEYIRSLRE 507
           R  +E  RRL+E  +   + N+ + L     + +E + K +   KH+  ++EE  +   +
Sbjct: 510 REQDERQRRLEEEAREAAFRNEQERLEAT--RRAEELRKSKEEEKHRLFMEEERRKQAAK 567

Query: 508 QKMRE 522
           QK+ E
Sbjct: 568 QKLLE 572


>At5g47780.1 68418.m05902 glycosyl transferase family 8 protein
           contains Pfam profile: PF01501 glycosyl transferase
           family 8; strong similarity to unknown protein
           (emb|CAB71043.1)
          Length = 616

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 24/101 (23%), Positives = 44/101 (43%), Gaps = 10/101 (9%)
 Frame = +1

Query: 232 NISSAKTDGGNISTAAPQSDHYKDLI---KIEIAMRRVEENSR-------RLKEYTKSIL 381
           N   AK D GN+     Q  H KD +   K+ +++   + N+        R+KE  +++ 
Sbjct: 144 NAFGAKKDTGNVLMPDAQVRHLKDQLIRAKVYLSLPSAKANAHFVRELRLRIKEVQRALA 203

Query: 382 WDNKDKSLWCVLFKESERMDKGRLGGKHQQSVDEEYIRSLR 504
             +KD  L     ++ + M++    GK  Q      ++ LR
Sbjct: 204 DASKDSDLPKTAIEKLKAMEQTLAKGKQIQDDCSTVVKKLR 244


>At2g21800.1 68415.m02591 expressed protein
          Length = 475

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 19/80 (23%), Positives = 35/80 (43%)
 Frame = +1

Query: 220 LSRINISSAKTDGGNISTAAPQSDHYKDLIKIEIAMRRVEENSRRLKEYTKSILWDNKDK 399
           LS  ++   K      + AA +    K+  K++ A  + E+   +  E  K      KDK
Sbjct: 181 LSADSLPKKKMSKDEKTRAAEEKKLQKEQEKLQKAASKAEDAEHKKLEREKQKWAKEKDK 240

Query: 400 SLWCVLFKESERMDKGRLGG 459
           +L C++     ++ +G  GG
Sbjct: 241 ALKCIVAWIDNKVLEGSFGG 260


>At1g34060.1 68414.m04222 alliinase family protein contains Pfam
           profiles: PF04864 allinase C-terminal domain, PF04863
           alliinase EGF-like domain
          Length = 463

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 17/59 (28%), Positives = 28/59 (47%)
 Frame = -3

Query: 492 YILFVDGLLMFSAQSPFVHSLTFFE*NTPKRLILVIPKYRFSVLLQPSAVFFNATHCYF 316
           +++F  G     A +    SLT    ++P RL+  IP Y    + +  A FF++ H  F
Sbjct: 156 FVIFGSGTTQLLAAAVHALSLTNSSVSSPARLLTSIPYY---AMYKDQAEFFDSAHLKF 211


>At3g10180.1 68416.m01219 kinesin motor protein-related similar to
           centromere protein E GB:4502781 [Homo sapiens]
          Length = 1348

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/53 (24%), Positives = 28/53 (52%)
 Frame = +1

Query: 328 RRVEENSRRLKEYTKSILWDNKDKSLWCVLFKESERMDKGRLGGKHQQSVDEE 486
           R ++E ++++K  +  +L  N+D+      FK+ +R D   +G   + S  E+
Sbjct: 402 RVLQEQAKKIKNLSSMVLLSNRDEKREQDHFKKGKRRDTWCIGKLSRDSTSED 454


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,008,818
Number of Sequences: 28952
Number of extensions: 314995
Number of successful extensions: 792
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1814318400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)