Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0825
         (660 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26H5.10c |tif51||translation initiation factor eIF5A|Schizos...   200   1e-52
SPBC336.10c |tif512||translation initiation factor|Schizosacchar...   200   2e-52
SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomy...    30   0.26 
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha...    27   3.2  
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos...    27   3.2  
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po...    27   3.2  
SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po...    27   3.2  
SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|ch...    27   3.2  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   7.3  
SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos...    25   7.3  
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    25   7.3  
SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom...    25   9.7  
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    25   9.7  
SPBC16E9.17c |rem1||meiosis-specific cyclin Rem1|Schizosaccharom...    25   9.7  
SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|c...    25   9.7  

>SPAC26H5.10c |tif51||translation initiation factor
           eIF5A|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 157

 Score =  200 bits (488), Expect = 1e-52
 Identities = 86/138 (62%), Positives = 115/138 (83%)
 Frame = +2

Query: 89  DSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFNGKKYE 268
           ++GAS TFPMQCSALRKNG V++KGRPCKIV+MSTSKTGKHGHAKVH+V +DIFNG+KYE
Sbjct: 13  EAGASLTFPMQCSALRKNGHVVIKGRPCKIVDMSTSKTGKHGHAKVHIVALDIFNGRKYE 72

Query: 269 DICPSTHNMDVPHVKREDYQLTDISDNGYLTLMADNGDLREDLKIPDGDLGTQLRTDFDS 448
           D+ PSTHNMDVP VKR++YQL +I D+GYL LM  +G  ++D+++P+G+LG ++   FD 
Sbjct: 73  DMSPSTHNMDVPVVKRDEYQLVNI-DDGYLNLMTTDGTTKDDVRLPEGELGNEIEEGFDE 131

Query: 449 GKELLCTVLKSCXEECVI 502
           G++L+ TV+ +  EE  +
Sbjct: 132 GRDLIITVVSAMGEETAL 149


>SPBC336.10c |tif512||translation initiation
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 157

 Score =  200 bits (487), Expect = 2e-52
 Identities = 86/138 (62%), Positives = 115/138 (83%)
 Frame = +2

Query: 89  DSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFNGKKYE 268
           ++GAS TFPMQCSALRKNG V++KGRPCKIV+MSTSKTGKHGHAKVH+V +DIFNG+KYE
Sbjct: 13  EAGASLTFPMQCSALRKNGHVVIKGRPCKIVDMSTSKTGKHGHAKVHIVALDIFNGRKYE 72

Query: 269 DICPSTHNMDVPHVKREDYQLTDISDNGYLTLMADNGDLREDLKIPDGDLGTQLRTDFDS 448
           D+ PSTHNMDVP VKR++YQL +I D+GYL LM  +G  ++D+++P+G+LG ++   F+ 
Sbjct: 73  DMSPSTHNMDVPVVKRDEYQLVNI-DDGYLNLMTTDGTTKDDVRLPEGELGNEIEEGFEE 131

Query: 449 GKELLCTVLKSCXEECVI 502
           GK+L+ TV+ +  EE  +
Sbjct: 132 GKDLIITVVSAMGEEIAL 149


>SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 537

 Score = 30.3 bits (65), Expect = 0.26
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -2

Query: 107 WLRPRSLPVSKCVFFDVTHCCVL 39
           W++ R  P+ +CVFF + HC VL
Sbjct: 193 WVKHRDFPIVQCVFFTL-HCAVL 214


>SPAC13G7.04c |mac1||membrane anchored protein Mac1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 756

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +3

Query: 489 RSASSPSKQTQLSTNKPTQH 548
           +S SSPS+ + LST+KP  H
Sbjct: 286 KSESSPSRSSVLSTSKPEVH 305


>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
           Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 449

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = +2

Query: 113 PMQCSALRKNGFVMLKGRPCKIVEMSTSKTGK-HGHAKVHLVGIDIFNGKKY 265
           P +CS  ++     ++   C  V       G+ H     H++G+D+ NG  Y
Sbjct: 35  PRRCSTCKRINKRSIRCLSCHSVGCLWGHHGEEHAMEHTHMIGVDVKNGHTY 86


>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 981

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +2

Query: 206 KHGHAKVHLVGIDIFNGKKYEDICPSTHNMDVPHVKREDY 325
           K   A   L+  D F+G ++  IC S  N+ +  V  ED+
Sbjct: 878 KEADAYAPLLAYDKFDGDEFACICESMKNVKLDFVTLEDW 917


>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 594

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +2

Query: 197 KTGKHGHAKVHLVGIDIFNGK-KYEDICPSTHNMDVPHVKRED 322
           K G+H  A  +++  +  N   K +D CPST   D+ H+ R D
Sbjct: 164 KIGQHLSAMGYVIPKEWTNTMVKLQDRCPSTSLKDIDHLFRVD 206


>SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 204

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 145 FRYAEGSSMQDC*NVHIQNRKARPR*SSLGWD 240
           + + E   +Q C N+  +N +A  R SS GWD
Sbjct: 41  YHHLEKGLLQQCFNLVKKNMEALYRQSSFGWD 72


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 20/82 (24%), Positives = 35/82 (42%)
 Frame = +2

Query: 329  LTDISDNGYLTLMADNGDLREDLKIPDGDLGTQLRTDFDSGKELLCTVLKSCXEECVIXV 508
            + D SD G  +   +N   ++     D +L   L T   +GK   C +      +C++  
Sbjct: 2846 ILDASDPGNYSNNIENPYTKD---FEDSNLAYVLYTSGSTGKPKGCCLTHHNVVQCMLAF 2902

Query: 509  KANTALDK*TNSAFIGLTNF*F 574
            +   A +  TNS F+   +F F
Sbjct: 2903 QDQFAGEWDTNSRFLAFASFHF 2924


>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 785

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = -2

Query: 206 FRFWMWTFQQSCMDD--PSA*RNHFYAGPNIAWGRWLRPRSLPVSKCVFFDVTHCCVLNL 33
           FRF+++ F  S + +  PS     F A    AW  W+RP S P    +F + T   +L +
Sbjct: 262 FRFFLYVFIASFIWNWFPSY---IFQALSLFAWVTWIRPNS-PTVNQIFGESTGISILPM 317

Query: 32  T 30
           T
Sbjct: 318 T 318


>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +2

Query: 308 VKREDYQLTDISDNGYL 358
           +KREDY+LT  ++ GYL
Sbjct: 91  IKREDYELTLCANCGYL 107


>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1188

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = +3

Query: 477 NPAVRSASSPSKQTQLSTNKPT 542
           N +++ +S PS++  LS+N+PT
Sbjct: 87  NQSIQGSSLPSEKPYLSSNQPT 108


>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 583

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -1

Query: 561 VNPINAELVYLSRAVFALTXMTHSSXQDFSTVH-NNSLPLSKSV 433
           V+P  ++LV LSR VF++     S   + S+ H +N+L    S+
Sbjct: 234 VSPEESQLVMLSRFVFSVASGWVSVLMNSSSAHQSNNLEFPSSI 277


>SPBC16E9.17c |rem1||meiosis-specific cyclin
           Rem1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 402

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -3

Query: 289 VCGGTDIFILFTIEDINPNQVNFSVAVLSG 200
           +CG T +FI    E+I+P  V     VL G
Sbjct: 219 LCGATALFIACKYEEIHPPTVKDLEIVLEG 248


>SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 801

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 7/28 (25%), Positives = 17/28 (60%)
 Frame = +2

Query: 305 HVKREDYQLTDISDNGYLTLMADNGDLR 388
           +  + D+     ++NGY+ + ++ GD+R
Sbjct: 577 YATKNDFSSAATTENGYIAVASNKGDIR 604


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,832,135
Number of Sequences: 5004
Number of extensions: 61909
Number of successful extensions: 184
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)