Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0825
(660 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0093 + 702223-702348,703434-703556,703646-703702,703797-70... 182 2e-46
07_03_1141 - 24264534-24264635,24265542-24265616,24265709-242657... 175 3e-44
03_06_0030 + 31161821-31161927,31163700-31163934,31164064-311648... 166 2e-41
12_02_0477 + 19503678-19503803,19504381-19504422,19504631-195046... 138 1e-40
07_01_0904 + 7609863-7610198,7610320-7610415,7610564-7610659 50 1e-06
04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585 32 0.35
08_02_0610 + 19307537-19308011,19308187-19310846 31 0.81
03_02_0910 + 12317493-12317960,12319678-12319734,12320592-123206... 29 2.5
11_06_0437 - 23533218-23536382 29 3.3
01_06_1303 - 36132588-36132710,36133879-36134103,36134318-361347... 29 4.3
01_06_0448 + 29462920-29463052,29463220-29463349,29463608-294637... 29 4.3
01_06_0343 + 28566513-28566644,28566791-28568494,28569178-285692... 29 4.3
10_01_0357 - 3928646-3928954 28 7.6
08_02_0861 - 21974524-21975224,21975307-21975467,21975563-21976695 28 7.6
08_02_0749 - 20769224-20770535,20770649-20771510,20771622-207732... 28 7.6
02_05_0402 + 28687597-28687671,28688123-28688235,28688927-286894... 28 7.6
>07_01_0093 +
702223-702348,703434-703556,703646-703702,703797-703871,
704105-704212
Length = 162
Score = 182 bits (443), Expect = 2e-46
Identities = 79/143 (55%), Positives = 111/143 (77%), Gaps = 2/143 (1%)
Frame = +2
Query: 89 DSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFNGKKYE 268
D+GAS T+P Q +RKNG++++K RPCK+VE+STSKTGKHGHAK H VGIDIFNGKK E
Sbjct: 14 DAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLE 73
Query: 269 DICPSTHNMDVPHVKREDYQLTDISDNGYLTLMADNGDLREDLKIP-DGDLGTQLRTDF- 442
DI PS+HN DVPHV R DYQL DIS++G+++L+ ++G+ ++DL++P D L Q++ F
Sbjct: 74 DIVPSSHNCDVPHVDRTDYQLIDISEDGFVSLLTESGNTKDDLRLPTDDTLTNQIKNGFG 133
Query: 443 DSGKELLCTVLKSCXEECVIXVK 511
+ GK+++ TV+ + EE + VK
Sbjct: 134 EEGKDMILTVMSAMGEEQICAVK 156
>07_03_1141 -
24264534-24264635,24265542-24265616,24265709-24265765,
24265903-24266025,24266509-24266520,24267014-24267157,
24267606-24267626
Length = 177
Score = 175 bits (425), Expect = 3e-44
Identities = 78/146 (53%), Positives = 110/146 (75%), Gaps = 5/146 (3%)
Frame = +2
Query: 89 DSGASATFPMQCSALRKNGFVMLKGRPCK----IVEMSTSKTGKHGHAKVHLVGIDIFNG 256
D+GAS T+P Q +RKNG++++K RPCK +VE+STSKTGKHGHAK H V IDIFNG
Sbjct: 27 DAGASKTYPQQAGTIRKNGYIVIKNRPCKGFGKVVEVSTSKTGKHGHAKCHFVAIDIFNG 86
Query: 257 KKYEDICPSTHNMDVPHVKREDYQLTDISDNGYLTLMADNGDLREDLKIP-DGDLGTQLR 433
KK EDI PS+HN DVPHV R +YQL DIS++G+++L+ ++G+ ++DL++P D L Q++
Sbjct: 87 KKLEDIVPSSHNCDVPHVNRTEYQLIDISEDGFVSLLTESGNTKDDLRLPTDDSLLGQIK 146
Query: 434 TDFDSGKELLCTVLKSCXEECVIXVK 511
T F GK+L+ TV+ + EE + +K
Sbjct: 147 TGFGEGKDLVVTVMSAMGEEQICALK 172
>03_06_0030 + 31161821-31161927,31163700-31163934,31164064-31164826,
31165816-31167650,31169294-31169424,31169993-31170075,
31170426-31170680,31171125-31171220,31171695-31171775,
31171811-31171968,31172434-31172534,31172614-31172629,
31173390-31173439,31174558-31174588,31175156-31175305,
31176135-31176173,31176288-31176410,31176496-31176552,
31176837-31176911,31177003-31177107
Length = 1496
Score = 166 bits (403), Expect = 2e-41
Identities = 79/155 (50%), Positives = 108/155 (69%), Gaps = 14/155 (9%)
Frame = +2
Query: 89 DSGASATFPMQCSALRKNGFVMLKGRPCK-------------IVEMSTSKTGKHGHAKVH 229
D+GAS T+P Q +RKNG +++K RPCK +VE+STSKTGKHGHAK H
Sbjct: 1336 DAGASKTYPQQAGTIRKNGHIVIKNRPCKWSGNHASLLVDTKVVEVSTSKTGKHGHAKCH 1395
Query: 230 LVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDNGYLTLMADNGDLREDLKIP- 406
V IDIFNGKK EDI PS+HN DVPHV R DYQL DIS++G+++L+ ++G ++DL++P
Sbjct: 1396 FVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTESGGTKDDLRLPS 1455
Query: 407 DGDLGTQLRTDFDSGKELLCTVLKSCXEECVIXVK 511
D L TQ++ F GK+L+ TV+ + EE + +K
Sbjct: 1456 DEALLTQIKDGFAEGKDLIVTVMSAMGEEQICALK 1490
>12_02_0477 +
19503678-19503803,19504381-19504422,19504631-19504684,
19504946-19505068,19505154-19505210,19505299-19505373,
19505925-19506026
Length = 192
Score = 138 bits (334), Expect(2) = 1e-40
Identities = 61/114 (53%), Positives = 87/114 (76%), Gaps = 1/114 (0%)
Frame = +2
Query: 173 KIVEMSTSKTGKHGHAKVHLVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDNG 352
K+VE+STSKTGKHGHAK H V IDIF KK EDI PS+HN DVPHV R +YQL DIS++G
Sbjct: 74 KVVEVSTSKTGKHGHAKCHFVAIDIFTAKKLEDIVPSSHNCDVPHVNRTEYQLIDISEDG 133
Query: 353 YLTLMADNGDLREDLKIP-DGDLGTQLRTDFDSGKELLCTVLKSCXEECVIXVK 511
+++L+ +NG+ ++DL++P D +L +Q++ F GK+L+ TV+ + EE + +K
Sbjct: 134 FVSLLTENGNTKDDLRLPTDDNLLSQIKDGFGEGKDLVVTVMSAMGEEQICALK 187
Score = 46.0 bits (104), Expect(2) = 1e-40
Identities = 16/29 (55%), Positives = 23/29 (79%)
Frame = +2
Query: 89 DSGASATFPMQCSALRKNGFVMLKGRPCK 175
D+GAS T+P Q +RKNG++++K RPCK
Sbjct: 14 DAGASKTYPQQAGTIRKNGYIVIKNRPCK 42
>07_01_0904 + 7609863-7610198,7610320-7610415,7610564-7610659
Length = 175
Score = 50.4 bits (115), Expect = 1e-06
Identities = 23/61 (37%), Positives = 44/61 (72%), Gaps = 2/61 (3%)
Frame = +2
Query: 305 HVKREDYQLTDISDNG-YLTLMADNGDLREDLKIPDGD-LGTQLRTDFDSGKELLCTVLK 478
H+ R +YQL DIS++G +++L+ ++G+ ++DL +P D L Q++T F GK+++ TV+
Sbjct: 46 HMNRTNYQLIDISEDGLFVSLLTESGNTKDDLGLPTYDNLLGQIKTGFGEGKDVVVTVMS 105
Query: 479 S 481
+
Sbjct: 106 A 106
>04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585
Length = 268
Score = 32.3 bits (70), Expect = 0.35
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = +3
Query: 93 PGPQPPSPCNVRPCVKMVSLC*RVVHARLLKCPHPKPE 206
P PQPP PC PC K C + C PKP+
Sbjct: 81 PLPQPPPPCKPPPCEKPPEDC-KPKPCHCCSCEKPKPK 117
>08_02_0610 + 19307537-19308011,19308187-19310846
Length = 1044
Score = 31.1 bits (67), Expect = 0.81
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = -2
Query: 101 RPRSLPVSKC--VFFDVTHCCVLNLTTVRNDM 12
R R LPV +C FD+ CC L T+ NDM
Sbjct: 825 RRRRLPVRRCDVCHFDLRTCCALPPATLENDM 856
>03_02_0910 +
12317493-12317960,12319678-12319734,12320592-12320666,
12321219-12321299,12321472-12321546,12321818-12321862,
12321975-12322064,12322153-12322254,12322366-12322420,
12324966-12325027,12325521-12325555,12325877-12326115,
12326219-12328035
Length = 1066
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Frame = +2
Query: 266 EDICPSTHNMDVPHVKREDYQLTDISDNGYLTLMADNGDLRED--LKIPDGDLGTQLRTD 439
E+I P+ + MD+ + E Y + I++N + GD+ + L +P+ +L +
Sbjct: 571 EEIPPNANGMDIDSDREETYNVEGIAENSEDCRVRGGGDIDTECNLSLPEHELPLHQESK 630
Query: 440 FDS 448
DS
Sbjct: 631 SDS 633
>11_06_0437 - 23533218-23536382
Length = 1054
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +2
Query: 215 HAKVHLVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDNG 352
HA LV + I N +K DI D+ H K+E Y+L + G
Sbjct: 179 HACRKLVDLVIKNKEKTADIENKEKKADIEHKKKEPYKLAIVGTGG 224
>01_06_1303 -
36132588-36132710,36133879-36134103,36134318-36134713,
36135352-36135547,36135591-36135740,36135818-36135924,
36135987-36136094,36136354-36136435,36136436-36136536,
36136778-36136996,36137455-36137583,36137665-36137742,
36137816-36137929,36138071-36138230,36139224-36139441
Length = 801
Score = 28.7 bits (61), Expect = 4.3
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = +2
Query: 59 HRRTHTLIPEDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMS 190
HR T +P +ATFPM L N + +GR CK V +S
Sbjct: 443 HRGTSIFLP-----TATFPMFPERLAMNAMSLQQGRGCKSVTVS 481
>01_06_0448 +
29462920-29463052,29463220-29463349,29463608-29463732,
29463923-29464458
Length = 307
Score = 28.7 bits (61), Expect = 4.3
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -3
Query: 184 FNNLAWTTLQHNETIFTQGRTLHGEGG 104
+N+ AW + ++ IF G +HG GG
Sbjct: 167 YNSAAWASFSSHQPIFLPGHGVHGCGG 193
>01_06_0343 + 28566513-28566644,28566791-28568494,28569178-28569240,
28569241-28569310,28570438-28570715,28571886-28571963,
28573017-28573715,28573811-28573913,28574096-28574196,
28574272-28574446,28574843-28575013,28575534-28575634,
28575706-28575771
Length = 1246
Score = 28.7 bits (61), Expect = 4.3
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -2
Query: 356 GSHYPRYQSVGSLRASREVRPCCV 285
G HY Y VG +A EV PC +
Sbjct: 1212 GPHYAHYDLVGGRKAVHEVYPCII 1235
>10_01_0357 - 3928646-3928954
Length = 102
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/47 (29%), Positives = 18/47 (38%)
Frame = +3
Query: 366 WLTTVTCVRTSKSRMVTSAHSCVLTSTAARNCCAPC*NPAVRSASSP 506
W ++ + V SA T+ A C PC NP RS P
Sbjct: 3 WAAAAAATASAAATAVASA----ATAAATERCVTPCSNPTARSIPRP 45
>08_02_0861 - 21974524-21975224,21975307-21975467,21975563-21976695
Length = 664
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 404 PDGDLGTQLRTDFDSGKELLCTVL 475
PDGDL ++R +SGKEL L
Sbjct: 206 PDGDLKDKMRDAMESGKELTSNAL 229
>08_02_0749 -
20769224-20770535,20770649-20771510,20771622-20773263,
20773357-20773701,20773858-20773952,20774218-20774344,
20774430-20774435
Length = 1462
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +2
Query: 155 LKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFNGKKYEDI 274
LK + V+ TSK G+ GH KV V ++ KK D+
Sbjct: 679 LKNQDLLDVDSGTSKIGQSGHDKVEHVTNELSISKKAADV 718
>02_05_0402 +
28687597-28687671,28688123-28688235,28688927-28689432,
28689544-28689717,28689953-28690082,28692241-28692772,
28693578-28693823,28694648-28695061
Length = 729
Score = 27.9 bits (59), Expect = 7.6
Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
Frame = +2
Query: 269 DICPSTHNMD---VPHVKREDYQLTDISDNGYLTLMADNGDLREDLKIPDGDLGTQLRTD 439
D CP T D V++ + TD +M G + GDLG+ RTD
Sbjct: 233 DQCPGTSATDSTGATCVQQAEKVSTDSDQVAKAAMMTAEGAMNFMRSTISGDLGSFPRTD 292
Query: 440 FDSGKE 457
SGKE
Sbjct: 293 AASGKE 298
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,822,989
Number of Sequences: 37544
Number of extensions: 440057
Number of successful extensions: 1269
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1265
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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