Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0825
         (660 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z27079-13|CAA81597.2|  195|Caenorhabditis elegans Hypothetical p...   181   3e-46
Z49967-1|CAA90247.1|  161|Caenorhabditis elegans Hypothetical pr...   180   6e-46
CU457743-2|CAM36365.1|  695|Caenorhabditis elegans Hypothetical ...    29   3.9  
Z70310-6|CAE17904.1|  293|Caenorhabditis elegans Hypothetical pr...    28   6.8  
U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical pr...    27   8.9  
U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four) int...    27   8.9  
AL161712-2|CAC70128.1|  313|Caenorhabditis elegans Hypothetical ...    27   8.9  

>Z27079-13|CAA81597.2|  195|Caenorhabditis elegans Hypothetical
           protein T05G5.10 protein.
          Length = 195

 Score =  181 bits (441), Expect = 3e-46
 Identities = 87/146 (59%), Positives = 111/146 (76%), Gaps = 2/146 (1%)
 Frame = +2

Query: 89  DSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFNGKKYE 268
           +SGA+ATFP QCSALRKN  VM++GRPCKIVEMSTSKTGKHGHAKVH+V IDIF  KK E
Sbjct: 49  ESGAAATFPKQCSALRKNEHVMIRGRPCKIVEMSTSKTGKHGHAKVHMVAIDIFTTKKLE 108

Query: 269 DICPSTHNMDVPHVKREDYQLTDISDNGYLTLM-ADNGDLREDLKIPDGDLGTQLRTDFD 445
           DICPSTHNMDVP VKR +Y L  I D G+ +LM  ++ +L++DLK+P+GDLG  +R   +
Sbjct: 109 DICPSTHNMDVPVVKRREYILMSIED-GFCSLMDPESCELKDDLKMPEGDLGNTIREALE 167

Query: 446 SGK-ELLCTVLKSCXEECVIXVKANT 520
             +  +L  V+ +C EE ++  K +T
Sbjct: 168 KDEGSVLVQVVAACGEEAILGYKIST 193


>Z49967-1|CAA90247.1|  161|Caenorhabditis elegans Hypothetical
           protein F54C9.1 protein.
          Length = 161

 Score =  180 bits (439), Expect = 6e-46
 Identities = 88/146 (60%), Positives = 111/146 (76%), Gaps = 2/146 (1%)
 Frame = +2

Query: 89  DSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFNGKKYE 268
           DSGA+ATFP QCSALRKN  VM+KGRPCKIVEMSTSKTGKHGHAKVH+V IDIF  KK E
Sbjct: 15  DSGAAATFPKQCSALRKNEHVMIKGRPCKIVEMSTSKTGKHGHAKVHMVAIDIFTSKKLE 74

Query: 269 DICPSTHNMDVPHVKREDYQLTDISDNGYLTLM-ADNGDLREDLKIPDGDLGTQLRTDFD 445
           DICPSTHNMDVP VKR +Y L  I D+GY +LM  ++ + ++DLK+PD +LG Q+R  ++
Sbjct: 75  DICPSTHNMDVPVVKRREYLLMAI-DDGYCSLMDPESCEQKDDLKLPDTELGQQIRDAYE 133

Query: 446 SGK-ELLCTVLKSCXEECVIXVKANT 520
             +  +L  V+ +  EE ++  K +T
Sbjct: 134 KDEGSVLVQVVSAIGEEAILGWKVST 159


>CU457743-2|CAM36365.1|  695|Caenorhabditis elegans Hypothetical
           protein K09E10.2 protein.
          Length = 695

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
 Frame = +2

Query: 290 NMDVPHVKREDYQLTDI--SDNGYLTLMADNGDLREDLKIPDGDLGTQLRTD-FDSGKEL 460
           N  +P +K++ Y L     +++GY+  +   GDL+   KI D      LR D ++ G+  
Sbjct: 573 NKFIPFIKKKLYILDSFPRANSGYIARVP--GDLKNGKKIEDIS-KAMLRPDGYERGRLR 629

Query: 461 LCTVLKSCXEEC 496
              ++K C ++C
Sbjct: 630 HAALVKECGDKC 641


>Z70310-6|CAE17904.1|  293|Caenorhabditis elegans Hypothetical
           protein R11A8.8 protein.
          Length = 293

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +2

Query: 350 GYLTLMADNGDLREDLKIPDGDLGTQLRTDFDSGKELLC 466
           GYL      GD ++++K+ +G    Q+ +D D  K   C
Sbjct: 251 GYLPQQPKKGDKKKNIKLKEGRTEHQIVSDIDPAKLRAC 289


>U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical protein
            F57F4.4 protein.
          Length = 2090

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
 Frame = +3

Query: 372  TTVTCVRTSKSRMVTSAHSCVLTSTAARNCCAP---C*NPAVRSASSPSK 512
            T +TC  T+  + +  ++SC         CC     C NP   +   P+K
Sbjct: 1822 TLLTCDPTTVCQQLNMSNSCQTVEPGVSGCCCDTDGCLNPLTNTYPGPAK 1871


>U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four)
            interacting proteinprotein 1 protein.
          Length = 2153

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
 Frame = +3

Query: 372  TTVTCVRTSKSRMVTSAHSCVLTSTAARNCCAP---C*NPAVRSASSPSK 512
            T +TC  T+  + +  ++SC         CC     C NP   +   P+K
Sbjct: 1822 TLLTCDPTTVCQQLNMSNSCQTVEPGVSGCCCDTDGCLNPLTNTYPGPAK 1871


>AL161712-2|CAC70128.1|  313|Caenorhabditis elegans Hypothetical
           protein Y66D12A.3 protein.
          Length = 313

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 15/42 (35%), Positives = 18/42 (42%)
 Frame = +2

Query: 59  HRRTHTLIPEDSGASATFPMQCSALRKNGFVMLKGRPCKIVE 184
           H+ T  ++PE          QC  L    FVMLK  PC   E
Sbjct: 46  HKPTGAVLPEKRDGEMPPNFQCPIL--TDFVMLKNSPCNPTE 85


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,077,984
Number of Sequences: 27780
Number of extensions: 370974
Number of successful extensions: 936
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 936
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)