Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0821
         (574 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5HDU3 Cluster: Drug transporter, putative; n=17; Staph...    34   2.7  
UniRef50_A3CLY9 Cluster: Putative uncharacterized protein; n=1; ...    32   8.3  

>UniRef50_Q5HDU3 Cluster: Drug transporter, putative; n=17;
           Staphylococcus|Rep: Drug transporter, putative -
           Staphylococcus aureus (strain COL)
          Length = 403

 Score = 33.9 bits (74), Expect = 2.7
 Identities = 14/28 (50%), Positives = 20/28 (71%)
 Frame = +3

Query: 444 NRSSIIFQSIKLIHLINFIQYLCVYLIL 527
           N+S I  +S  +  L+NFI YLC+YL+L
Sbjct: 8   NKSPIFTKSFTINFLVNFIVYLCMYLLL 35


>UniRef50_A3CLY9 Cluster: Putative uncharacterized protein; n=1;
           Streptococcus sanguinis SK36|Rep: Putative
           uncharacterized protein - Streptococcus sanguinis
           (strain SK36)
          Length = 254

 Score = 32.3 bits (70), Expect = 8.3
 Identities = 18/45 (40%), Positives = 27/45 (60%)
 Frame = +3

Query: 147 HVSSLLVIFYVLVRSVQVMRTTNNTSMILISFKSSNILFNYIILE 281
           ++SS +V+F +LV  V +   TN+ S +  SF    I F YIIL+
Sbjct: 110 NISSAIVLFTILVGVVFIGNITNHKSPLQWSFIDYAIAFLYIILQ 154


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 441,664,949
Number of Sequences: 1657284
Number of extensions: 7400001
Number of successful extensions: 16308
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 15847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16293
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 39154548218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)