Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0821
         (574 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g23530.1 68415.m02808 expressed protein ; expression supporte...    28   3.8  
At3g05820.1 68416.m00653 beta-fructofuranosidase, putative / inv...    27   6.7  
At1g25510.1 68414.m03168 aspartyl protease family protein contai...    27   8.9  

>At2g23530.1 68415.m02808 expressed protein ; expression supported
           by MPSS
          Length = 555

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -3

Query: 116 ARVTRGAESAASPPEPRSLVGRVRR 42
           ARVTR    AA  P P S+ GR+R+
Sbjct: 527 ARVTRSKRKAALEPNPDSIGGRLRQ 551


>At3g05820.1 68416.m00653 beta-fructofuranosidase, putative /
           invertase, putative / saccharase, putative /
           beta-fructosidase, putative similar to neutral invertase
           [Daucus carota] GI:4200165; contains Pfam profile
           PF04853: Plant neutral invertase
          Length = 633

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = +3

Query: 111 SCSTITTSRVHHHVSSLLVIFYVLVRSVQVMRTTNNTSMILISFKSSNI 257
           SC       +H H   +  +FY  +RS + M T N++S  +I   S+ +
Sbjct: 325 SCMIDRRMGIHGHPLEIQALFYSALRSSREMITVNDSSKNIIKTISNRL 373


>At1g25510.1 68414.m03168 aspartyl protease family protein contains
           Pfam domain, PF00026: eukaryotic aspartyl protease
          Length = 483

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 16/40 (40%), Positives = 18/40 (45%)
 Frame = +1

Query: 1   LPGTS*AKVNLSCPRRTLPTSERGSGGDAADSAPRVTRAQ 120
           L G S     L  P+ +    E GSGG   DS   VTR Q
Sbjct: 333 LTGISVGGELLQIPQSSFEMDESGSGGIIIDSGTAVTRLQ 372


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,391,196
Number of Sequences: 28952
Number of extensions: 154065
Number of successful extensions: 306
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 306
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1112061928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)