Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0819
         (750 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...    23   2.6  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    22   4.6  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   6.0  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   6.0  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   6.0  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   6.0  

>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
           protein.
          Length = 490

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +3

Query: 105 IHGSLTTLARDTGGKDRQRPII 170
           I+GSL  L  D G  D Q+P I
Sbjct: 217 IYGSLKNLNTDHGFLDGQKPFI 238


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 12/49 (24%), Positives = 20/49 (40%)
 Frame = +1

Query: 322 EGAKDKDIYSWYHNFKGSGCHTLPREEQSRSGCHRLCCSSDRHGQVSVQ 468
           E  KDKD   W+    G G +     + + SG   + C +  +  +  Q
Sbjct: 38  ELCKDKDAGEWFRLVAGEGDNCRDVIQCTSSGLQAIRCPAGLYFDIDKQ 86


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/25 (28%), Positives = 15/25 (60%)
 Frame = -3

Query: 559  SIAGIVRVLPSAHVKFGDRNGNIVD 485
            S+AG+ + +   H K GD   ++++
Sbjct: 1112 SLAGLFKCMLCTHQKAGDEKASLIN 1136


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/25 (28%), Positives = 15/25 (60%)
 Frame = -3

Query: 559  SIAGIVRVLPSAHVKFGDRNGNIVD 485
            S+AG+ + +   H K GD   ++++
Sbjct: 1112 SLAGLFKCMLCTHQKAGDEKASLIN 1136


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/25 (28%), Positives = 15/25 (60%)
 Frame = -3

Query: 559  SIAGIVRVLPSAHVKFGDRNGNIVD 485
            S+AG+ + +   H K GD   ++++
Sbjct: 1112 SLAGLFKCMLCTHQKAGDEKASLIN 1136


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/25 (28%), Positives = 15/25 (60%)
 Frame = -3

Query: 559  SIAGIVRVLPSAHVKFGDRNGNIVD 485
            S+AG+ + +   H K GD   ++++
Sbjct: 1112 SLAGLFKCMLCTHQKAGDEKASLIN 1136


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,359
Number of Sequences: 336
Number of extensions: 4130
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20027417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)