Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0819
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    27   2.2  
SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyc...    27   2.9  
SPAC7D4.09c |||steroid dehydrogenase |Schizosaccharomyces pombe|...    27   3.8  
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    26   5.0  
SPBC409.08 |||spermine family transporter |Schizosaccharomyces p...    26   6.6  
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ...    26   6.6  
SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.7  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    25   8.7  
SPBC887.10 |mcs4||two-component response regulator |Schizosaccha...    25   8.7  

>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 670 IVAAHXXGHLLGAVHD 717
           +V AH  GH+LG +HD
Sbjct: 225 LVVAHEIGHILGLIHD 240


>SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +2

Query: 488 YDIAVAITKLD--MCRRQYANDACNRGTAGFAYVGGACVV 601
           YD A+++   D  + + +Y  +A  RGT   A  G  C+V
Sbjct: 4   YDRALSVFSPDGRLLQVEYGQEAVRRGTTAIALRGNECIV 43


>SPAC7D4.09c |||steroid dehydrogenase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 274

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +2

Query: 629 VAIIRRHWWVFLVSSWLL 682
           +A+I +HW ++LV  W+L
Sbjct: 225 IALIAQHWLIWLVLGWVL 242


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 17/36 (47%), Positives = 24/36 (66%)
 Frame = -1

Query: 408 TLFLSR*GVASRPLEIMIPAIDILILGPFSSLYLKS 301
           T+F S   VAS  L+ ++PAI  LI G FSS ++K+
Sbjct: 372 TVFGSCLSVASS-LQQILPAIPDLIKGKFSSHFIKT 406


>SPBC409.08 |||spermine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 539

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 513 NLTCAEGNTRTMPAIEGQQVLLTWE 587
           NL  AEG  R     EG++ L+TWE
Sbjct: 61  NLETAEGVYRDPTINEGEEELVTWE 85


>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1213

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 602  NKRLXKVNSVAIIRRHWWVFL 664
            N  L  ++ + IIR +WW+FL
Sbjct: 978  NCELKNLSIIDIIRNNWWLFL 998


>SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 527

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 620 PFXISCSQRKLLPRKQNLLSLYCRH 546
           P  +S    +L P  +NLLS YC H
Sbjct: 250 PRLLSLQGLRLKPEFRNLLSYYCSH 274


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +2

Query: 203  PEILVIVDYDGYRLHGGDNVQIKRYFVSFWNGVDLRY 313
            PEI + V  D + +HGGD  Q+      F   +D  +
Sbjct: 1363 PEIRLNVHTDDFWIHGGDLTQLHSILSFFGFSLDYNF 1399


>SPBC887.10 |mcs4||two-component response regulator
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 522

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 493 IVDGQPPLSEQILAHVGQSCSRVDGI 416
           I D + PL+    AH+G   +++DGI
Sbjct: 306 IADNKDPLNADTQAHLGFPSNQIDGI 331


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,174,827
Number of Sequences: 5004
Number of extensions: 68182
Number of successful extensions: 163
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)