Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0819
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0333 + 2570807-2571061,2571186-2571397,2571961-2572225,257...    31   0.74 
02_05_0288 - 27549718-27549940,27550025-27550102,27550282-275506...    31   0.74 
12_02_0384 + 18409831-18409843,18410378-18410471,18410614-184107...    31   1.3  
04_04_0850 - 28697462-28697684,28697894-28697971,28698103-286984...    31   1.3  
10_08_0601 + 19103745-19105162,19105253-19105717,19106314-19106539     30   1.7  
02_05_0316 - 27825871-27826509                                         30   2.3  
10_08_0986 + 22050631-22051224,22051493-22051703,22051791-220520...    29   5.2  
06_03_0905 + 25843547-25844314                                         28   6.9  

>12_01_0333 +
           2570807-2571061,2571186-2571397,2571961-2572225,
           2572542-2572841
          Length = 343

 Score = 31.5 bits (68), Expect = 0.74
 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
 Frame = -3

Query: 337 YPWPLQQFVPQINSVPKRYEI--TFDLHVVAAM*PVPIIINNDQYLGVYNIRRLAFLSIM 164
           Y W  Q+++P   +  +  EI    DL V+  M  +P+I N  +  G+Y       L   
Sbjct: 205 YQWMTQKWLPSSAAAMRHPEIFSKHDLEVLQKMMAMPLIENKSRQQGIYESTHRDLLVAF 264

Query: 163 GLCRSFPPVSLAN 125
           G    F P+++ N
Sbjct: 265 GKW-EFDPMNITN 276


>02_05_0288 -
           27549718-27549940,27550025-27550102,27550282-27550674,
           27550752-27551347,27552232-27552978
          Length = 678

 Score = 31.5 bits (68), Expect = 0.74
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = -3

Query: 391 VRCGIPTP*NYDTSYRYPYPWPLQQFVPQINSVPKRYEITFD 266
           +RC +P P    + YR P+PWP  + V    +VP + E+T +
Sbjct: 159 LRCLVPAP----SGYRNPFPWPASRDVAWFANVPHK-ELTVE 195


>12_02_0384 +
           18409831-18409843,18410378-18410471,18410614-18410734,
           18411635-18412543,18412772-18413211,18413481-18414516
          Length = 870

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = -3

Query: 229 IINNDQYLGVYNIRRLAFLSIMGLCRSFPPVSLANVVRLP*MRSHSCGQLP 77
           I +N ++L ++  R +    +MGLCRS  P    N++ L   R+ +   LP
Sbjct: 501 IPSNVRHLSIFTKRYIGCHDLMGLCRSL-PCDFGNLISLRKFRAKNFSYLP 550


>04_04_0850 -
           28697462-28697684,28697894-28697971,28698103-28698495,
           28698590-28698893,28698978-28699188,28699943-28700674
          Length = 646

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -3

Query: 391 VRCGIPTP*NYDTSYRYPYPWPLQQFVPQINSVPKRYEITFD 266
           +RC +P P      YR P+PWP  + V    +VP + E+T +
Sbjct: 154 LRCLVPAP----QGYRNPFPWPTSRDVAWFANVPHK-ELTVE 190


>10_08_0601 + 19103745-19105162,19105253-19105717,19106314-19106539
          Length = 702

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -3

Query: 394 EVRCGIPTP*NYDTSYRYPYPWPLQQFVPQINSVPKR 284
           E+RC IP P      YR P+ WP  +     N++P +
Sbjct: 144 EIRCLIPAP----PKYRTPFKWPQSRDFAWFNNIPHK 176


>02_05_0316 - 27825871-27826509
          Length = 212

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = -3

Query: 457 LAHVGQSCS--RVDGIPTYSVPLEVRCGIPTP*NYDTSYRYPYPWPL 323
           +AH  ++C   R   IP   +P     G+P P +YD SY YP P PL
Sbjct: 148 MAHEQRTCPLCRAPLIPDELLP--AASGLPDPSDYDLSY-YPSPLPL 191


>10_08_0986 +
           22050631-22051224,22051493-22051703,22051791-22052082,
           22052415-22052780,22052878-22052955,22053099-22053327
          Length = 589

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -3

Query: 394 EVRCGIPTP*NYDTSYRYPYPWP-LQQFVPQINSVPKRYEI 275
           ++RC IP P  Y T    P+PWP  + +VP  N+  K   +
Sbjct: 107 KLRCLIPAPKGYVT----PFPWPKSRDYVPYANAPYKNLTV 143


>06_03_0905 + 25843547-25844314
          Length = 255

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -3

Query: 664 QKNPPVSSNDGY*IDLX*SLVHNASSSHVSKTCCPSIAGIVRV 536
           Q+ P  S   G  +DL   LVH      V   CCP + G+V +
Sbjct: 170 QRCPVDSLKIGACVDLLGGLVHVGIGDPVVNKCCPLLEGLVEL 212


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,632,724
Number of Sequences: 37544
Number of extensions: 528358
Number of successful extensions: 1203
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1202
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)