Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0819
(750 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_13625| Best HMM Match : Reprolysin (HMM E-Value=2.3e-15) 33 0.19
SB_57725| Best HMM Match : Peptidase_C54 (HMM E-Value=3.8e-05) 31 0.76
SB_27293| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_53432| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_20619| Best HMM Match : Na_sulph_symp (HMM E-Value=0.0069) 29 3.0
SB_55589| Best HMM Match : adh_short (HMM E-Value=0.14) 29 4.0
SB_27553| Best HMM Match : Pyr_redox (HMM E-Value=1.1e-20) 29 5.3
SB_20283| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_15612| Best HMM Match : Keratin_B2 (HMM E-Value=0.61) 29 5.3
SB_3656| Best HMM Match : bZIP_2 (HMM E-Value=1e-09) 28 9.3
>SB_13625| Best HMM Match : Reprolysin (HMM E-Value=2.3e-15)
Length = 715
Score = 33.5 bits (73), Expect = 0.19
Identities = 37/149 (24%), Positives = 59/149 (39%), Gaps = 1/149 (0%)
Frame = +2
Query: 164 HNRQKREAPYVIYPEILVIVDYDGYRLHGGDNVQIKRYFVSFWNGVDLRYKLLKGPXXXX 343
H RQ+R E+LV+ D + HG ++ Y ++ N V+ Y+
Sbjct: 184 HERQRRSVSTERNVEVLVVADRTMHEFHGA---ALEEYLLTVMNMVNNIYRDQSIGNAIN 240
Query: 344 XXXXXXXXXXXDATPYLERNRVGRDAIDSAAALTDMGKYLFRERRLPVY-DIAVAITKLD 520
D P L+ + I+S A + R P + D+AV +T+ D
Sbjct: 241 IVVVRIIILKRDL-PDLDIGHHAGNTIESFCAWAS--RVNPRSDTHPKHHDVAVLVTRKD 297
Query: 521 MCRRQYANDACNRGTAGFAYVGGACVVNK 607
+C+ ++ C GT G A V G C K
Sbjct: 298 ICKG--IDEPC--GTLGLAQVNGMCTSTK 322
>SB_57725| Best HMM Match : Peptidase_C54 (HMM E-Value=3.8e-05)
Length = 223
Score = 31.5 bits (68), Expect = 0.76
Identities = 18/47 (38%), Positives = 23/47 (48%)
Frame = +1
Query: 322 EGAKDKDIYSWYHNFKGSGCHTLPREEQSRSGCHRLCCSSDRHGQVS 462
E ++K +YS H + SG H L E RS HR HG+VS
Sbjct: 154 ESEQNKALYSHEHRVRSSGYHELTSEHGERSSGHRE--QPFGHGEVS 198
>SB_27293| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 372
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = -3
Query: 646 SSNDGY*IDLX*SLVHNASSSHVSKTCCPSIAGIVRV 536
S N GY ++V+ +S VS CCPS+AG+VR+
Sbjct: 132 SQNGGY--QFAATIVYISSGHFVS--CCPSVAGVVRM 164
>SB_53432| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 82
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Frame = +1
Query: 643 KTLVGFSGI---IVAAHXXGHLLGAVHDGS 723
K L G SGI I+ AH H LG HDG+
Sbjct: 14 KALAGNSGIQASIIVAHEIAHTLGVGHDGA 43
>SB_20619| Best HMM Match : Na_sulph_symp (HMM E-Value=0.0069)
Length = 215
Score = 29.5 bits (63), Expect = 3.0
Identities = 9/31 (29%), Positives = 21/31 (67%)
Frame = +3
Query: 213 WSLLIMMGTGYMAATTCRSNVISYRFGTELI 305
W+++I++G+G+ A C+ + +S G +L+
Sbjct: 45 WNIIILLGSGFALAEACKVSGLSEWLGLQLV 75
>SB_55589| Best HMM Match : adh_short (HMM E-Value=0.14)
Length = 337
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +2
Query: 218 IVDYDGYRLHGGDNVQIKRYFVSFWNGVDLRYK 316
I++ ++ DN+ K+Y +S WNG+DL K
Sbjct: 10 IIESQAFKTPLWDNIATKKY-MSLWNGLDLEMK 41
>SB_27553| Best HMM Match : Pyr_redox (HMM E-Value=1.1e-20)
Length = 1037
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/55 (25%), Positives = 27/55 (49%)
Frame = -3
Query: 604 VHNASSSHVSKTCCPSIAGIVRVLPSAHVKFGDRNGNIVDGQPPLSEQILAHVGQ 440
++N + SK+ CP + + S +V++ ++VD P + E +L GQ
Sbjct: 574 INNNAVMIFSKSFCPFCKKVKAIFESINVQYTAMELDLVDNGPAIQEALLEKSGQ 628
>SB_20283| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 956
Score = 28.7 bits (61), Expect = 5.3
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = -3
Query: 451 HVGQSCSRVDGIPT-YSVPLEVR-CGIPTP*NYDTSYRYPYPW 329
H+ + +RVDG PL+V G+P+P +Y S R P P+
Sbjct: 57 HLNDAVTRVDGSSEDIDKPLDVPFTGLPSPQSYKPSLRSPMPF 99
>SB_15612| Best HMM Match : Keratin_B2 (HMM E-Value=0.61)
Length = 343
Score = 28.7 bits (61), Expect = 5.3
Identities = 19/52 (36%), Positives = 22/52 (42%)
Frame = +3
Query: 381 PHLTSRGTE*VGMPSTLLQL*PTWASICSERGGCPSTILPLRSPNLTCAEGN 536
P T T P+T QL P +I + G PS PLR P C E N
Sbjct: 20 PPTTREPTNITMAPTTRGQLLPNMTTILTNTIGTPSPATPLR-PRFKCYETN 70
>SB_3656| Best HMM Match : bZIP_2 (HMM E-Value=1e-09)
Length = 241
Score = 27.9 bits (59), Expect = 9.3
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3
Query: 462 CSERGGCPSTILPLRSPNL 518
CS G CP ++LP++S NL
Sbjct: 121 CSGDGTCPGSLLPVKSENL 139
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,276,334
Number of Sequences: 59808
Number of extensions: 570511
Number of successful extensions: 1359
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1357
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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