Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0819
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74037-5|CAA98493.3|  509|Caenorhabditis elegans Hypothetical pr...    32   0.50 
AB044562-1|BAA96734.1|  509|Caenorhabditis elegans MIG-17 protein.     32   0.50 
U41992-4|AAL02506.2|  876|Caenorhabditis elegans Hypothetical pr...    30   1.5  
U52002-9|AAB37727.2|  839|Caenorhabditis elegans Human dice1 (de...    30   2.0  
U52002-8|AAU05577.1|  842|Caenorhabditis elegans Human dice1 (de...    30   2.0  
U80027-22|AAC48112.1|  336|Caenorhabditis elegans Seven tm recep...    29   2.7  
AF047655-11|AAC04405.1|  336|Caenorhabditis elegans Seven tm rec...    29   2.7  
U42846-1|AAA83600.2|  872|Caenorhabditis elegans Hypothetical pr...    29   3.5  
X75331-1|CAA53080.1|  620|Caenorhabditis elegans acetylcholinest...    29   4.7  
U58731-1|AAB00593.1|  620|Caenorhabditis elegans Abnormal acetyl...    29   4.7  
AF040642-1|AAN73871.2|  272|Caenorhabditis elegans Hypothetical ...    29   4.7  
U41010-5|AAV28334.1|  975|Caenorhabditis elegans Hypothetical pr...    28   6.2  
U41010-4|AAV28333.1| 1622|Caenorhabditis elegans Hypothetical pr...    28   6.2  
Z75545-3|CAA99886.1|  922|Caenorhabditis elegans Hypothetical pr...    28   8.1  
U80814-5|AAB37991.1|  368|Caenorhabditis elegans Cop-9 signaloso...    28   8.1  
AF016423-5|AAB65320.1|  230|Caenorhabditis elegans Hypothetical ...    28   8.1  
AF003142-8|AAB54185.2|  205|Caenorhabditis elegans Hypothetical ...    28   8.1  

>Z74037-5|CAA98493.3|  509|Caenorhabditis elegans Hypothetical
           protein F57B7.4 protein.
          Length = 509

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 22/58 (37%), Positives = 28/58 (48%)
 Frame = +2

Query: 422 IDSAAALTDMGKYLFRERRLPVYDIAVAITKLDMCRRQYANDACNRGTAGFAYVGGAC 595
           IDS  A+     +L  +  LP ++ AV ITK D+      N   N  T G AYVG  C
Sbjct: 227 IDSKKAIDKFTIWLKEQTGLPRHEHAVLITKFDLIS---ING--NSATQGMAYVGNIC 279



 Score = 29.1 bits (62), Expect = 3.5
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +1

Query: 670 IVAAHXXGHLLGAVHDGS 723
           ++ AH  GH LGA+HDG+
Sbjct: 298 LIMAHEIGHSLGALHDGA 315


>AB044562-1|BAA96734.1|  509|Caenorhabditis elegans MIG-17 protein.
          Length = 509

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 22/58 (37%), Positives = 28/58 (48%)
 Frame = +2

Query: 422 IDSAAALTDMGKYLFRERRLPVYDIAVAITKLDMCRRQYANDACNRGTAGFAYVGGAC 595
           IDS  A+     +L  +  LP ++ AV ITK D+      N   N  T G AYVG  C
Sbjct: 227 IDSKKAIDKFTIWLKEQTGLPRHEHAVLITKFDLIS---ING--NSATQGMAYVGNIC 279



 Score = 29.1 bits (62), Expect = 3.5
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +1

Query: 670 IVAAHXXGHLLGAVHDGS 723
           ++ AH  GH LGA+HDG+
Sbjct: 298 LIMAHEIGHSLGALHDGA 315


>U41992-4|AAL02506.2|  876|Caenorhabditis elegans Hypothetical
           protein F32E10.3 protein.
          Length = 876

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +2

Query: 95  VTTHSWXPDHIGKRYRRKRSAEAHNRQKREAPYV 196
           V   S  PDH  +RY  +R++E H +Q+R   Y+
Sbjct: 167 VDCESTSPDHHAQRYICQRTSENHKQQQRSNNYI 200


>U52002-9|AAB37727.2|  839|Caenorhabditis elegans Human dice1
           (deleted in cancer)homolog protein 1, isoform a protein.
          Length = 839

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -3

Query: 358 DTSYRYPYPWPLQQFVPQINSVPKRYEITFD 266
           D++YR PY  P++    ++N +    E+ FD
Sbjct: 550 DSAYRTPYSSPIEDLTSKLNRIQANIELMFD 580


>U52002-8|AAU05577.1|  842|Caenorhabditis elegans Human dice1
           (deleted in cancer)homolog protein 1, isoform b protein.
          Length = 842

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -3

Query: 358 DTSYRYPYPWPLQQFVPQINSVPKRYEITFD 266
           D++YR PY  P++    ++N +    E+ FD
Sbjct: 553 DSAYRTPYSSPIEDLTSKLNRIQANIELMFD 583


>U80027-22|AAC48112.1|  336|Caenorhabditis elegans Seven tm receptor
           protein 64 protein.
          Length = 336

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -1

Query: 174 CRLWASADLFRLYLLPMWSGXHECVV 97
           C  W  +  +  Y+L MWSG H  ++
Sbjct: 77  CNTWLGSKTWLRYMLAMWSGCHTLII 102


>AF047655-11|AAC04405.1|  336|Caenorhabditis elegans Seven tm
           receptor protein 63 protein.
          Length = 336

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -1

Query: 174 CRLWASADLFRLYLLPMWSGXHECVV 97
           C  W  +  +  Y+L MWSG H  ++
Sbjct: 77  CNTWLGSKTWLRYMLAMWSGCHTLII 102


>U42846-1|AAA83600.2|  872|Caenorhabditis elegans Hypothetical
           protein T19D2.1 protein.
          Length = 872

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
 Frame = +1

Query: 616 KGQFSSHHSKTL---VGFSGIIVAAHXXGHLLGAVHDG 720
           KG  S   S T+   + F  + V  H  GH LG  HDG
Sbjct: 263 KGMCSGVRSCTINEGLDFGSVFVVTHEMGHSLGMYHDG 300


>X75331-1|CAA53080.1|  620|Caenorhabditis elegans
           acetylcholinesterase protein.
          Length = 620

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -3

Query: 487 DGQPPLSEQILAHVGQSCSRVDGIPTYSVPL-EVRCGIPTP 368
           DG P   E++L+  G+  +R  GIP    P+  +R   P P
Sbjct: 25  DGSPLFGEEVLSQTGKPLTRFQGIPFAEPPVGNLRFKKPKP 65


>U58731-1|AAB00593.1|  620|Caenorhabditis elegans Abnormal
           acetylcholinesterase protein1 protein.
          Length = 620

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -3

Query: 487 DGQPPLSEQILAHVGQSCSRVDGIPTYSVPL-EVRCGIPTP 368
           DG P   E++L+  G+  +R  GIP    P+  +R   P P
Sbjct: 25  DGSPLFGEEVLSQTGKPLTRFQGIPFAEPPVGNLRFKKPKP 65


>AF040642-1|AAN73871.2|  272|Caenorhabditis elegans Hypothetical
           protein C50D2.6 protein.
          Length = 272

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 18/50 (36%), Positives = 29/50 (58%)
 Frame = +2

Query: 377 DATPYLERNRVGRDAIDSAAALTDMGKYLFRERRLPVYDIAVAITKLDMC 526
           +ATP L+  ++G+ ++ S  + T   K L  ER    YDI  A T++D+C
Sbjct: 39  EATPLLQSEQLGQLSLSSLVS-TSSNKEL-TERSF--YDICQAYTRVDLC 84


>U41010-5|AAV28334.1|  975|Caenorhabditis elegans Hypothetical
           protein T05A12.4b protein.
          Length = 975

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +2

Query: 146 KRSAEAHNRQKREAPYVIYPEILVIVDYDGYRLHGGDNVQIKRYF 280
           K ++E+ NR+      +I PE L+   +     H  DN+++  YF
Sbjct: 416 KCTSESENRRAVGTTLIILPESLIFQWFTEISKHCSDNIKVMFYF 460


>U41010-4|AAV28333.1| 1622|Caenorhabditis elegans Hypothetical
           protein T05A12.4a protein.
          Length = 1622

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +2

Query: 146 KRSAEAHNRQKREAPYVIYPEILVIVDYDGYRLHGGDNVQIKRYF 280
           K ++E+ NR+      +I PE L+   +     H  DN+++  YF
Sbjct: 416 KCTSESENRRAVGTTLIILPESLIFQWFTEISKHCSDNIKVMFYF 460


>Z75545-3|CAA99886.1|  922|Caenorhabditis elegans Hypothetical
           protein K10D3.4 protein.
          Length = 922

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 426 TLLQL*PTWASICSERGGCPSTI 494
           TL Q  PT+  ICS  GG PS +
Sbjct: 269 TLQQCCPTYLFICSRNGGIPSEV 291


>U80814-5|AAB37991.1|  368|Caenorhabditis elegans Cop-9 signalosome
           subunit protein 5 protein.
          Length = 368

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 307 EVQTAEGAKDKDIYSWYHNFKGSGC 381
           E+   EG K+K +  WYH+  G GC
Sbjct: 123 EMCDTEGRKEK-VVGWYHSHPGYGC 146


>AF016423-5|AAB65320.1|  230|Caenorhabditis elegans Hypothetical
           protein F40A3.2 protein.
          Length = 230

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +1

Query: 322 EGAKDKDIYSWYHNFKGS 375
           E A  KDIY WY+NF  S
Sbjct: 105 EIADTKDIYKWYNNFTSS 122


>AF003142-8|AAB54185.2|  205|Caenorhabditis elegans Hypothetical
           protein F57C9.2 protein.
          Length = 205

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 18/38 (47%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = +1

Query: 343 IYSWYHNFKGSGCHTLPREEQSRSGC--HRLCCSSDRH 450
           +YS Y NF  SGCH    EE   SGC  H L  +S  H
Sbjct: 82  VYSPYGNFFLSGCHP---EEDHLSGCDFHSLPHNSSVH 116


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,133,673
Number of Sequences: 27780
Number of extensions: 410964
Number of successful extensions: 989
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 989
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)