Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0819
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   5.3  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   7.1  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   9.3  

>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +3

Query: 654 GFFWYHRGCSXXWTFVRSG 710
           G  +YH+ CS  W  + +G
Sbjct: 13  GGLYYHQRCSRDWFRISAG 31


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 413 RDAIDSAAALTDMGKYL 463
           RDAIDS   +T  G +L
Sbjct: 351 RDAIDSGNVITPQGVFL 367


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = +2

Query: 386 PYLERNRVGRDAIDSAAALTDMG 454
           PY   +++GRD +    +L   G
Sbjct: 143 PYSPNSKIGRDELSQPGSLNGYG 165


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 228,756
Number of Sequences: 438
Number of extensions: 5709
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)