Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0819
         (750 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g26560.1 68414.m03236 glycosyl hydrolase family 1 protein con...    30   1.4  
At5g54220.1 68418.m06754 hypothetical protein                          29   4.4  
At1g26900.1 68414.m03280 pentatricopeptide (PPR) repeat-containi...    29   4.4  
At2g43200.1 68415.m05369 dehydration-responsive family protein s...    28   7.6  

>At1g26560.1 68414.m03236 glycosyl hydrolase family 1 protein
           contains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
           similar to amygdalin hydrolase isoform AH I precursor
           (GI:16757966)  [Prunus serotina]
          Length = 510

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = +3

Query: 516 LTCAEGNTRTMPAIEGQQVLLT 581
           LTC EGN+ T P I G  V+LT
Sbjct: 223 LTCREGNSSTEPYIVGHNVILT 244


>At5g54220.1 68418.m06754 hypothetical protein 
          Length = 96

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +2

Query: 509 TKLDMCRRQYANDACNRGTAGFAYVGGACV 598
           T  + C   + N  CN+   G AY  G+C+
Sbjct: 36  TCYESCNATFQNPECNKMCVGLAYKDGSCI 65


>At1g26900.1 68414.m03280 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 572

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +1

Query: 331 KDKDIYSWYHNFKGSGCHTLPRE 399
           KDKD+ SW     G G H L RE
Sbjct: 390 KDKDVKSWTAMISGYGAHGLARE 412


>At2g43200.1 68415.m05369 dehydration-responsive family protein
           similar to early-responsive to dehydration stress ERD3
           protein [Arabidopsis thaliana] GI:15320410; contains
           Pfam profile PF03141: Putative methyltransferase
          Length = 611

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -3

Query: 388 RCGIPTP*NYDTSYRYPYPWPLQQFVPQINSVP 290
           RC +P P    T Y+ P+PWP  +      +VP
Sbjct: 134 RCLVPKP----TGYKTPFPWPESRKYAWFRNVP 162


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,279,807
Number of Sequences: 28952
Number of extensions: 385822
Number of successful extensions: 879
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 874
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)