Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0814
         (450 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q1HQ52 Cluster: Interleukin enhancer binding factor iso...    85   9e-16
UniRef50_Q12905 Cluster: Interleukin enhancer-binding factor 2; ...    58   7e-08
UniRef50_Q4T1I1 Cluster: Chromosome undetermined SCAF10575, whol...    42   0.006
UniRef50_Q5CAJ0 Cluster: OSJNBb0068N06.27 protein; n=8; Magnolio...    31   8.8  
UniRef50_A3AS28 Cluster: Putative uncharacterized protein; n=1; ...    31   8.8  

>UniRef50_Q1HQ52 Cluster: Interleukin enhancer binding factor
           isoform 2; n=1; Bombyx mori|Rep: Interleukin enhancer
           binding factor isoform 2 - Bombyx mori (Silk moth)
          Length = 126

 Score = 84.6 bits (200), Expect = 9e-16
 Identities = 38/42 (90%), Positives = 38/42 (90%)
 Frame = +1

Query: 211 PFNRPRVLMLRPPFDLLLAXPAFPXCKPXPDDXVLTQALLKR 336
           PFNRPRVLMLRPPFDLLLA PAFP CKP PDD VLTQALLKR
Sbjct: 22  PFNRPRVLMLRPPFDLLLAEPAFPRCKPAPDDSVLTQALLKR 63


>UniRef50_Q12905 Cluster: Interleukin enhancer-binding factor 2;
           n=54; Eumetazoa|Rep: Interleukin enhancer-binding factor
           2 - Homo sapiens (Human)
          Length = 390

 Score = 58.4 bits (135), Expect = 7e-08
 Identities = 27/62 (43%), Positives = 38/62 (61%)
 Frame = +1

Query: 247 PFDLLLAXPAFPXCKPXPDDXVLTQALLKRHTELCXXPTDQXAVLSLFTKLQTVLXXIGV 426
           PFD  L   AFP  KP PD+   ++ALLKR+ +L     +Q ++LSL TK+  V+  + V
Sbjct: 31  PFDFYLCEMAFPRVKPAPDETSFSEALLKRNQDLAPNSAEQASILSLVTKINNVIDNLIV 90

Query: 427 AP 432
           AP
Sbjct: 91  AP 92


>UniRef50_Q4T1I1 Cluster: Chromosome undetermined SCAF10575, whole
           genome shotgun sequence; n=2; Tetraodontidae|Rep:
           Chromosome undetermined SCAF10575, whole genome shotgun
           sequence - Tetraodon nigroviridis (Green puffer)
          Length = 406

 Score = 41.9 bits (94), Expect = 0.006
 Identities = 17/41 (41%), Positives = 24/41 (58%)
 Frame = +1

Query: 247 PFDLLLAXPAFPXCKPXPDDXVLTQALLKRHTELCXXPTDQ 369
           PFD  +   AFP  KP PD+   ++ LLKR+ +L   P +Q
Sbjct: 30  PFDFYVCEMAFPRVKPPPDETAFSECLLKRNQDLSPTPAEQ 70


>UniRef50_Q5CAJ0 Cluster: OSJNBb0068N06.27 protein; n=8;
           Magnoliophyta|Rep: OSJNBb0068N06.27 protein - Oryza
           sativa (Rice)
          Length = 404

 Score = 31.5 bits (68), Expect = 8.8
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = +3

Query: 180 YPRPGRDGAFTLQQTPSLDASSALRPFTSXTRFS 281
           +PR G DG   L QTPS  A+ AL   T+ T  S
Sbjct: 83  FPRRGEDGVHLLSQTPSSPAAWALSAATTGTAAS 116


>UniRef50_A3AS28 Cluster: Putative uncharacterized protein; n=1;
           Oryza sativa (japonica cultivar-group)|Rep: Putative
           uncharacterized protein - Oryza sativa subsp. japonica
           (Rice)
          Length = 314

 Score = 31.5 bits (68), Expect = 8.8
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = +3

Query: 180 YPRPGRDGAFTLQQTPSLDASSALRPFTSXTRFS 281
           +PR G DG   L QTPS  A+ AL   T+ T  S
Sbjct: 71  FPRRGEDGVHLLSQTPSSPAAWALSAATTGTAAS 104


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 343,299,131
Number of Sequences: 1657284
Number of extensions: 5291165
Number of successful extensions: 10416
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10406
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 23604537544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)