Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0814
         (450 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom...    25   4.1  
SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit Ssr4|Schizos...    25   5.4  

>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 17/62 (27%), Positives = 24/62 (38%)
 Frame = +1

Query: 247 PFDLLLAXPAFPXCKPXPDDXVLTQALLKRHTELCXXPTDQXAVLSLFTKLQTVLXXIGV 426
           P  +L   P  P     PD   L Q +L+    LC        V  L  + +T+L  + V
Sbjct: 213 PLTVLTQNPNLPKLLERPDINDLHQGILQELDSLCNCLGSSLDVKKLSKQRETLLSHMQV 272

Query: 427 AP 432
            P
Sbjct: 273 NP 274


>SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit
           Ssr4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 14/49 (28%), Positives = 19/49 (38%)
 Frame = +3

Query: 171 WTRYPRPGRDGAFTLQQTPSLDASSALRPFTSXTRFSXMQTGTRRLRAH 317
           WT   +P     F + Q P+L +      F S  RF  M    + L  H
Sbjct: 58  WTLIDQPPDGSLFLVWQAPTLPSPPDGMHFMSNERFFNMDVAGKVLEIH 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,413,914
Number of Sequences: 5004
Number of extensions: 21417
Number of successful extensions: 29
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)