Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0814
         (450 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0229 - 13006869-13007017,13007925-13008089,13008178-130083...    31   0.32 
10_08_0851 - 21065832-21065948,21066361-21066705,21067181-210674...    29   1.3  
12_02_0190 + 15170991-15171369,15172048-15172273,15172626-15172746     28   3.0  
10_03_0010 + 7007694-7007888,7007994-7008059,7008161-7008334,700...    27   5.3  
04_01_0070 - 706640-706747,707221-707307,707397-707502,707585-70...    27   7.0  
06_03_0391 - 20287755-20288084,20288174-20288414,20288519-202888...    27   9.2  

>04_03_0229 -
           13006869-13007017,13007925-13008089,13008178-13008332,
           13010276-13011021
          Length = 404

 Score = 31.5 bits (68), Expect = 0.32
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = +3

Query: 180 YPRPGRDGAFTLQQTPSLDASSALRPFTSXTRFS 281
           +PR G DG   L QTPS  A+ AL   T+ T  S
Sbjct: 83  FPRRGEDGVHLLSQTPSSPAAWALSAATTGTAAS 116


>10_08_0851 -
           21065832-21065948,21066361-21066705,21067181-21067489,
           21067574-21067648,21067754-21067917,21067994-21068432
          Length = 482

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +3

Query: 201 GAFTLQQTPSLDASSALRPFTSXTRFSXMQTGTRRLRAHSGP 326
           G  +   TPS+DA +  R F+  + FS    G+     HSGP
Sbjct: 20  GCCSSSTTPSMDAVNLSRTFSDVSSFSEEHGGSGSSVDHSGP 61


>12_02_0190 + 15170991-15171369,15172048-15172273,15172626-15172746
          Length = 241

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
 Frame = +3

Query: 150 GARHRPWWTRYPRPGRDGAFTLQQTPSLDA-SSALRPFTSXTRFSXMQTGTRRLRAHSGP 326
           G   RP+W   P P R      + +PS  A S A R      R + +   +R  R H G 
Sbjct: 74  GLPGRPFWALPPTPRRSSTAAFRASPSGSAGSEAARGTKVVVRAARVSPPSRPQRPHRGL 133

Query: 327 S 329
           S
Sbjct: 134 S 134


>10_03_0010 +
           7007694-7007888,7007994-7008059,7008161-7008334,
           7009232-7009306,7009384-7009510,7012280-7012371,
           7012496-7012566,7012683-7012792,7013016-7013053,
           7013825-7013960,7014382-7014456,7014574-7014697,
           7014917-7015013,7015426-7015451,7016180-7016255,
           7016499-7016636,7016735-7016872
          Length = 585

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 18/62 (29%), Positives = 27/62 (43%)
 Frame = +1

Query: 220 RPRVLMLRPPFDLLLAXPAFPXCKPXPDDXVLTQALLKRHTELCXXPTDQXAVLSLFTKL 399
           R R +   PP   +L   +FP   P  D  +L   L +RH   C  P     VL ++ + 
Sbjct: 9   RARAVPSAPPPPFILRQLSFPAAVPALDLDILCCRLSRRHRLAC-LPQPPSDVLVVYQRC 67

Query: 400 QT 405
           Q+
Sbjct: 68  QS 69


>04_01_0070 -
           706640-706747,707221-707307,707397-707502,707585-707693,
           707766-708145,708508-708601,709351-709475,709633-709674,
           710822-710892,710979-711060,711157-711277,712404-712713
          Length = 544

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = +1

Query: 244 PPFDLLLAXPAFPXCKPXPD 303
           PPF L LA P FP   P PD
Sbjct: 36  PPFLLDLASPPFPPKNPRPD 55


>06_03_0391 -
           20287755-20288084,20288174-20288414,20288519-20288844,
           20288954-20289097,20289260-20289380,20289645-20289733,
           20289821-20289891,20290165-20290309,20290390-20290479,
           20290991-20291239
          Length = 601

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 10/12 (83%), Positives = 11/12 (91%)
 Frame = -3

Query: 184 GYRVHHGRCRAP 149
           GYRV+HGR RAP
Sbjct: 522 GYRVYHGRGRAP 533


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,239,866
Number of Sequences: 37544
Number of extensions: 146715
Number of successful extensions: 303
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 303
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)