Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0814
         (450 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g31400.1 68415.m03837 pentatricopeptide (PPR) repeat-containi...    30   0.63 
At4g39780.1 68417.m05633 AP2 domain-containing transcription fac...    27   5.9  

>At2g31400.1 68415.m03837 pentatricopeptide (PPR) repeat-containing
           protein low similarity to fertility restorer [Petunia x
           hybrida] GI:22128587, post-transcriptional control of
           chloroplast gene expression CRP1 [Zea mays] GI:3289002;
           contains Pfam profile PF01535: PPR repeat
          Length = 918

 Score = 30.3 bits (65), Expect = 0.63
 Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +3

Query: 159 HRPWWTRYPRPGRDGAFTLQQTPSLDASSALRPFTSXT-RFSXMQT 293
           HRPW  + PRPGR         PS  AS +    +  T  FS +QT
Sbjct: 15  HRPWLPQRPRPGRS---VTSAPPSSSASVSSAHLSQTTPNFSPLQT 57


>At4g39780.1 68417.m05633 AP2 domain-containing transcription
           factor, putative similar to AP2 domain containing
           protein RAP2.4,Arabidopsis thaliana
          Length = 272

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 360 YRSXSCFEPLHETADSXGXYWCGSMR 437
           Y   SCF PLH + D+     C S+R
Sbjct: 158 YGGGSCFNPLHSSVDAKLQEICQSLR 183


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,425,991
Number of Sequences: 28952
Number of extensions: 115019
Number of successful extensions: 185
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 732537840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)