Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0813
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi...    30   0.31 
SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|c...    27   2.2  
SPCC825.03c |psy1|sso1|SNARE Psy1|Schizosaccharomyces pombe|chr ...    27   2.9  
SPBC31F10.02 |||thioesterase superfamily protein|Schizosaccharom...    27   3.8  
SPAC1B9.02c |sck1||serine/threonine protein kinase Sck1|Schizosa...    26   5.0  
SPCC1281.03c |||DUF1077 family protein|Schizosaccharomyces pombe...    26   6.6  
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc...    25   8.7  

>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
           reductase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1053

 Score = 30.3 bits (65), Expect = 0.31
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = +1

Query: 277 FDGLEVVSPHEFEIVIY-LNQMGVLNFVDDGSLPGCAVLKLSDGRKRSMSLWVEFITA 447
           F  LE ++  +F ++I  L + G+L+   +  LP   +LKLS  +    S+W +   A
Sbjct: 26  FSFLEALTQEDFPVLIRALKRFGILDGFPNTRLPNEMILKLSSVQGEDASVWEQIPAA 83


>SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 581

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -3

Query: 106 IGPPSSLGERAWWLYWNSRGAHGSGAAVHARAQ 8
           + PP+++     +L W    AHG+G A+HA+ Q
Sbjct: 216 LAPPAAIA----FLIWALVKAHGAGDAIHAKTQ 244


>SPCC825.03c |psy1|sso1|SNARE Psy1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 284

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 16/41 (39%), Positives = 25/41 (60%)
 Frame = +1

Query: 142 ERVANRKAQITKTIHEVCRIVQDVLKEVELQEPRFISSLTD 264
           ER A+ K +I +TI E+ ++ QD+   V+ QEP     +TD
Sbjct: 186 ERHADIK-RIERTIAELAQLFQDMATMVQEQEPMVDKIVTD 225


>SPBC31F10.02 |||thioesterase superfamily
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 161

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
 Frame = -1

Query: 108 RLGRHHL--WGNEHGGCIGIHAEL 43
           +L +HHL   GN HGGCI    +L
Sbjct: 50  KLQKHHLNRMGNLHGGCIAALTDL 73


>SPAC1B9.02c |sck1||serine/threonine protein kinase
           Sck1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 696

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 90  LWGNEHGGCIGIHAELMVRVRRCTH 16
           L G+  G   G+H+ELM+   RC H
Sbjct: 195 LAGSASGSSSGLHSELMLADVRCPH 219


>SPCC1281.03c |||DUF1077 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 193

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +1

Query: 46  LRVNSNTATM-LVPPEMMAAQSKLVYQMNKFYNERVANRKAQITKTIH 186
           + +N  T  + LV P +     K+V   +KF   R   +K+ ++K IH
Sbjct: 1   MHINEETDWIDLVKPALAKKPKKIVDNSDKFPTPRGFQQKSLVSKNIH 48


>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 503

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/46 (26%), Positives = 20/46 (43%)
 Frame = -1

Query: 450 RSGDELDPEGHGTLPPVAQFQDGASWERAVVHEVQHSHLIEIDDDL 313
           RSG  L+  GH  +  V +   G    +  +    HS  I + +D+
Sbjct: 59  RSGQVLEVAGHKAIVQVFEGTSGVDVRKTTIDFTGHSMRIPVSEDM 104


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,984,622
Number of Sequences: 5004
Number of extensions: 59208
Number of successful extensions: 164
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)