Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0813
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0057 + 17543016-17543312                                         35   0.079
05_07_0184 - 28253448-28253743,28253835-28254102,28254439-28255869     31   0.98 
07_03_0971 + 23038409-23039134,23040321-23040611                       29   5.2  
07_01_0506 + 3766106-3766411                                           28   6.9  
04_03_0243 - 13271384-13272865,13272987-13273248,13274617-13276067     28   6.9  
03_03_0244 - 15772156-15773964,15774190-15774711                       28   9.1  

>05_04_0057 + 17543016-17543312
          Length = 98

 Score = 34.7 bits (76), Expect = 0.079
 Identities = 17/33 (51%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = -3

Query: 103 GPPSSLGERAWWLYWNSR-GAHGSGAAVHARAQ 8
           GPP   G R WWL   SR G  G  A VH R Q
Sbjct: 52  GPPGRRGGRRWWLLCPSRAGRRGKPAMVHLRLQ 84


>05_07_0184 - 28253448-28253743,28253835-28254102,28254439-28255869
          Length = 664

 Score = 31.1 bits (67), Expect = 0.98
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = +1

Query: 67  ATMLVPPEMMAAQSKLVYQMNKFYNERVANRKAQITKTIHEVCRIVQDVLKEVELQ 234
           A  L+PP   AA S +  +  K    R    KAQI +  +++CR V+  L    LQ
Sbjct: 420 AAALLPPTPSAAVSPMQRKPTKPRRRRQLKLKAQIIRDQNKICRKVKAALDRYALQ 475


>07_03_0971 + 23038409-23039134,23040321-23040611
          Length = 338

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
 Frame = -2

Query: 197 RHTSCIVFVICAFLLATLSL*N--LFI**TSLDWAAIISGGTSMVAVLEFTRSSWFGCGG 24
           R  SC+ F  C  LLAT SL      +  +SL   A + G    V+ + ++  S++ C  
Sbjct: 26  RAVSCVRFSPCGRLLATASLDGTVALLSPSSLAAIATLRGHADGVSDISWSTDSFYLCSA 85

Query: 23  ARTRTAR 3
           +  RT R
Sbjct: 86  SDDRTLR 92


>07_01_0506 + 3766106-3766411
          Length = 101

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
 Frame = +3

Query: 192 VSDSARCTQGGGVAGA----EVHILSHRLQRQVRRPRSGLAPR 308
           V+ SA   + GGVA       VH L HR+Q +  R R G  PR
Sbjct: 40  VAVSASVCRAGGVAQLVSLFSVHALEHRVQDEPGRRRRGEGPR 82


>04_03_0243 - 13271384-13272865,13272987-13273248,13274617-13276067
          Length = 1064

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +3

Query: 192 VSDSARCTQGGGVAGAEVHILSHRLQRQVRRPRSGLA 302
           +SDSA  + GGG  GA    L  RL++ V   R+ +A
Sbjct: 678 LSDSASSSGGGGGDGAAARELERRLRKNVPWQRAAVA 714


>03_03_0244 - 15772156-15773964,15774190-15774711
          Length = 776

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 17/59 (28%), Positives = 28/59 (47%)
 Frame = +1

Query: 52  VNSNTATMLVPPEMMAAQSKLVYQMNKFYNERVANRKAQITKTIHEVCRIVQDVLKEVE 228
           V  +  T+ +P     + SK VY+  +  NERVA   AQI        R ++ + +E +
Sbjct: 605 VEDSPRTITLPISEYHSLSKRVYEAEELANERVAAALAQIELAKESETRTLERLQQETK 663


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,278,250
Number of Sequences: 37544
Number of extensions: 461541
Number of successful extensions: 1332
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1331
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)