Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0813
         (750 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30809| Best HMM Match : Mab-21 (HMM E-Value=0)                     202   3e-52
SB_41709| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.19 
SB_52464| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_35582| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_20464| Best HMM Match : RVT_1 (HMM E-Value=0.016)                   30   1.7  
SB_9402| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.0  
SB_5006| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.3  
SB_53153| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_5235| Best HMM Match : DnaJ (HMM E-Value=3.4)                       28   7.0  
SB_11067| Best HMM Match : RVT_1 (HMM E-Value=0)                       28   7.0  
SB_33048| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.3  
SB_30343| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.3  

>SB_30809| Best HMM Match : Mab-21 (HMM E-Value=0)
          Length = 1710

 Score =  202 bits (492), Expect = 3e-52
 Identities = 97/180 (53%), Positives = 125/180 (69%), Gaps = 1/180 (0%)
 Frame = +1

Query: 124  MNKFYNERVANRKAQITKTIHEVCRIVQDVLKEVELQEPRFISSLTDYNGRFDGLEVVSP 303
            M  F +  V  RK++  + I  VCR+V +VLK VE  EPRFISSL   +GR+ GL VVSP
Sbjct: 1287 MKHFVSNIVHRRKSETYQAIANVCRVVPEVLKHVEALEPRFISSLKQLDGRYLGLYVVSP 1346

Query: 304  HEFEIVIYLNQMGVLNFVDDGSLPGCAVLKLSDGRKRSMSLWVEFITASGYLSARKIRSR 483
              FE+ +YLNQMGV NF+DDG   GCA+LKLSD RKRSMSLW EFITASGYLSARK+RSR
Sbjct: 1347 KRFEVCLYLNQMGVFNFIDDGCPSGCAMLKLSDERKRSMSLWTEFITASGYLSARKMRSR 1406

Query: 484  FQTLVAQACDKCSYRDCVKMI-AETTEVKLRIRERYIVQITPAFKCAGLWPRSXAHWPLP 660
            F +LV +A  + + +  V+M+ A +    L I + Y V++ PAF+C  +WP++   WP P
Sbjct: 1407 FTSLVGEAIRRGNLQSQVQMVGANSHSTVLSINDTYTVELIPAFRCGAIWPQNTCSWPSP 1466


>SB_41709| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 460

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 14/54 (25%), Positives = 28/54 (51%)
 Frame = +1

Query: 199 IVQDVLKEVELQEPRFISSLTDYNGRFDGLEVVSPHEFEIVIYLNQMGVLNFVD 360
           I     K+V   + RF   + +    ++GL+V +P EF+ +I + ++   + VD
Sbjct: 104 IASQFAKKVACHDARFKGEILNSGSHYEGLQVSAPDEFDYMIEIEELSKQSMVD 157


>SB_52464| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2529

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 19/55 (34%), Positives = 28/55 (50%)
 Frame = +1

Query: 178 TIHEVCRIVQDVLKEVELQEPRFISSLTDYNGRFDGLEVVSPHEFEIVIYLNQMG 342
           TI E  RI++DV+  V+ +   +I    D+   FD +E    H F I   L+Q G
Sbjct: 586 TIDEPIRIIEDVMNYVKNRNESYIMFAADFEKAFDSIE----HSF-IYATLSQFG 635


>SB_35582| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 222

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +1

Query: 175 KTIHEVCRIVQDVLKEVELQEPRFISSLTDYNGRFDGLE 291
           +TI E  RI++DV+  V+ +   +I    D+   FD +E
Sbjct: 100 RTIDEPIRIIEDVMNYVKNRNESYIMFAADFEKAFDSIE 138


>SB_20464| Best HMM Match : RVT_1 (HMM E-Value=0.016)
          Length = 357

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 19/56 (33%), Positives = 28/56 (50%)
 Frame = +1

Query: 175 KTIHEVCRIVQDVLKEVELQEPRFISSLTDYNGRFDGLEVVSPHEFEIVIYLNQMG 342
           +TI E  RI++DV+  V+ +   +I    D+   FD +E    H F I   L Q G
Sbjct: 205 RTIDEPIRIIEDVMNYVKNRNESYIVFAADFEKAFDSIE----HSF-IYATLRQFG 255


>SB_9402| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 365

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
 Frame = +1

Query: 550 ETTEVKLRI---RERYIVQITPAFKCAGLWPRSXAHWPLPG 663
           ++T +KL +   R+ Y V + P   C G W  S   W + G
Sbjct: 158 QSTTLKLNVLSDRDNYHVVLVPTIPCPGRWTYSAHAWQIEG 198


>SB_5006| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 657

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 18/67 (26%), Positives = 30/67 (44%)
 Frame = +1

Query: 67  ATMLVPPEMMAAQSKLVYQMNKFYNERVANRKAQITKTIHEVCRIVQDVLKEVELQEPRF 246
           A  LV  E    Q+KL  +  + + + V    A +T ++ E  RI+QD L + +      
Sbjct: 232 AEQLVKQEREDHQNKLSDENQRRHEDEVYLAHALVTSSVEEGKRIIQDTLAQFDNPHHSS 291

Query: 247 ISSLTDY 267
            +   DY
Sbjct: 292 TTCTADY 298


>SB_53153| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 424

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 19/72 (26%), Positives = 35/72 (48%)
 Frame = +1

Query: 52  VNSNTATMLVPPEMMAAQSKLVYQMNKFYNERVANRKAQITKTIHEVCRIVQDVLKEVEL 231
           + ++ A   + P   A+  +L+  + K  N R + RKA+    I     +  D+L+ V+ 
Sbjct: 334 IPTHAAEHFLKPNHSASDIELI-PIEKIRNNRDSIRKAREATLIARAGTLEPDLLEAVQR 392

Query: 232 QEPRFISSLTDY 267
           +  R I + TDY
Sbjct: 393 RAMRIIFTHTDY 404


>SB_5235| Best HMM Match : DnaJ (HMM E-Value=3.4)
          Length = 185

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 21/96 (21%), Positives = 40/96 (41%)
 Frame = -2

Query: 638 DRGHRPAHLNAGVICTMYLSRIRNLTSVVSAIIFTQSLYEHLSQA*ATNVWKRDRILRAD 459
           +R  RP+H     +CT++L+R       +  +  T +  + + QA  T       I+R +
Sbjct: 14  ERPIRPSHRLLLGLCTVHLTRKPASDKRIRQVNQTSAPDKRIRQAHQTRASSDKSIIRQE 73

Query: 458 RYPEAVMNSTQRDMERFLPSLSFKTAHPGSEPSSTK 351
               A     ++  ++  P    + AH  +  SS K
Sbjct: 74  HQKSASEKRIRQAHQKSAPEKRIRQAHHQTRASSDK 109


>SB_11067| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 1176

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +1

Query: 175 KTIHEVCRIVQDVLKEVELQEPRFISSLTDYNGRFDGLE 291
           + I E  RI++DV+  V+ +   +I    D+   FD +E
Sbjct: 298 RAIDEPIRIIEDVMNYVKNRNDSYIMFAADFEKAFDSIE 336


>SB_33048| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 216

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -1

Query: 615 LERRGYLHYVPFTNSQLDFGRFRDHFHAISIRALVTGLS 499
           + RR  L Y P++ + L  G +R       +RA VTG S
Sbjct: 129 VSRRIALQYYPYSPASLSQGEYRSSITHTHLRACVTGNS 167


>SB_30343| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 140

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 21/68 (30%), Positives = 32/68 (47%)
 Frame = +1

Query: 88  EMMAAQSKLVYQMNKFYNERVANRKAQITKTIHEVCRIVQDVLKEVELQEPRFISSLTDY 267
           E+    S L Y + K  +E+  N   +  K I E C    DVL ++   EPR+++   DY
Sbjct: 16  EIKMVASGLRYTIFKM-DEKKENVVMEKKKMITECCH--DDVLDDLPTDEPRYVALNLDY 72

Query: 268 NGRFDGLE 291
               +G E
Sbjct: 73  KNE-EGAE 79


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,581,364
Number of Sequences: 59808
Number of extensions: 483849
Number of successful extensions: 1292
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1288
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)