Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0813
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46242-5|CAA86330.2|  364|Caenorhabditis elegans Hypothetical pr...   257   5e-69
U19861-1|AAA97554.2|  364|Caenorhabditis elegans mab-21 protein ...   257   5e-69
Z81099-3|CAB03186.3|  490|Caenorhabditis elegans Hypothetical pr...    29   2.7  
U23177-6|AAA64330.1|  318|Caenorhabditis elegans Hypothetical pr...    29   3.5  
AF045641-5|AAC02577.2|  554|Caenorhabditis elegans Hypothetical ...    28   8.1  
AC006733-6|AAF60489.2|  581|Caenorhabditis elegans Hypothetical ...    28   8.1  

>Z46242-5|CAA86330.2|  364|Caenorhabditis elegans Hypothetical
           protein F35G12.6 protein.
          Length = 364

 Score =  257 bits (630), Expect = 5e-69
 Identities = 113/192 (58%), Positives = 152/192 (79%), Gaps = 1/192 (0%)
 Frame = +1

Query: 91  MMAAQSKLVYQMNKFYNERVANRKAQITKTIHEVCRIVQDVLKEVELQEPRFISSLTDYN 270
           M+     +VYQ+N ++NE+V +RK ++TKT+  + ++VQ++LKEVE QEPRFI++L++  
Sbjct: 1   MLGHNQNVVYQVNNYFNEKVQHRKVRVTKTVQRIAKVVQEILKEVEAQEPRFINTLSETT 60

Query: 271 -GRFDGLEVVSPHEFEIVIYLNQMGVLNFVDDGSLPGCAVLKLSDGRKRSMSLWVEFITA 447
            GRFDG+ V SP E+E V+YLNQMGV NFVDDG++ GCAVLKLSDGRKRSMSLWVEFITA
Sbjct: 61  TGRFDGIVVHSPSEYEAVLYLNQMGVFNFVDDGTIQGCAVLKLSDGRKRSMSLWVEFITA 120

Query: 448 SGYLSARKIRSRFQTLVAQACDKCSYRDCVKMIAETTEVKLRIRERYIVQITPAFKCAGL 627
           SGYLSARKIR RFQ +VAQ      + D  K++ + T+V++R+ ++Y VQIT AF+C G+
Sbjct: 121 SGYLSARKIRHRFQNIVAQVLQTPQFSDYCKLLQDNTDVRVRVDDKYTVQITCAFRCNGI 180

Query: 628 WPRSXAHWPLPG 663
           WPRS +HWP+ G
Sbjct: 181 WPRSASHWPIAG 192


>U19861-1|AAA97554.2|  364|Caenorhabditis elegans mab-21 protein
           protein.
          Length = 364

 Score =  257 bits (630), Expect = 5e-69
 Identities = 113/192 (58%), Positives = 152/192 (79%), Gaps = 1/192 (0%)
 Frame = +1

Query: 91  MMAAQSKLVYQMNKFYNERVANRKAQITKTIHEVCRIVQDVLKEVELQEPRFISSLTDYN 270
           M+     +VYQ+N ++NE+V +RK ++TKT+  + ++VQ++LKEVE QEPRFI++L++  
Sbjct: 1   MLGHNQNVVYQVNNYFNEKVQHRKVRVTKTVQRIAKVVQEILKEVEAQEPRFINTLSETT 60

Query: 271 -GRFDGLEVVSPHEFEIVIYLNQMGVLNFVDDGSLPGCAVLKLSDGRKRSMSLWVEFITA 447
            GRFDG+ V SP E+E V+YLNQMGV NFVDDG++ GCAVLKLSDGRKRSMSLWVEFITA
Sbjct: 61  TGRFDGIVVHSPSEYEAVLYLNQMGVFNFVDDGTIQGCAVLKLSDGRKRSMSLWVEFITA 120

Query: 448 SGYLSARKIRSRFQTLVAQACDKCSYRDCVKMIAETTEVKLRIRERYIVQITPAFKCAGL 627
           SGYLSARKIR RFQ +VAQ      + D  K++ + T+V++R+ ++Y VQIT AF+C G+
Sbjct: 121 SGYLSARKIRHRFQNIVAQVLQTPQFSDYCKLLQDNTDVRVRVDDKYTVQITCAFRCNGI 180

Query: 628 WPRSXAHWPLPG 663
           WPRS +HWP+ G
Sbjct: 181 WPRSASHWPIAG 192


>Z81099-3|CAB03186.3|  490|Caenorhabditis elegans Hypothetical
           protein K08F9.1 protein.
          Length = 490

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 11/39 (28%), Positives = 24/39 (61%)
 Frame = +1

Query: 208 DVLKEVELQEPRFISSLTDYNGRFDGLEVVSPHEFEIVI 324
           DV+++  L++  F+ ++  +   F G+ V+S   FEI++
Sbjct: 258 DVIQQKSLRDKAFVGAVVTFVMSFSGVAVISAFAFEILV 296


>U23177-6|AAA64330.1|  318|Caenorhabditis elegans Hypothetical
           protein C56G2.3 protein.
          Length = 318

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -1

Query: 393 FQDGASWERAVVHEVQHSHLIEIDDD 316
           + +G  W RA+ + +   HL+  DDD
Sbjct: 263 YMNGGDWSRALHNNISKRHLVNADDD 288


>AF045641-5|AAC02577.2|  554|Caenorhabditis elegans Hypothetical
           protein F53H1.3 protein.
          Length = 554

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 8/64 (12%)
 Frame = +1

Query: 424 LWVEFITAS---GYLS--ARKIRSRFQTLVAQA---CDKCSYRDCVKMIAETTEVKLRIR 579
           L+  FIT S   G+LS  +R + ++ +T   +A    D CS     K   E  ++ LRIR
Sbjct: 449 LYRRFITCSNFGGWLSMRSRDVNAQLKTHYVEALCSADFCSQTLATKHNVEIVDLVLRIR 508

Query: 580 ERYI 591
           ER I
Sbjct: 509 ERII 512


>AC006733-6|AAF60489.2|  581|Caenorhabditis elegans Hypothetical
           protein Y32H12A.5 protein.
          Length = 581

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -3

Query: 571 AT*LRSFPRSFSRNLYTSTCHRPELPTFGS 482
           AT   + P     N Y  T HRP LP+F S
Sbjct: 270 ATNFETLPEWLQDNEYLRTGHRPPLPSFSS 299


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,946,281
Number of Sequences: 27780
Number of extensions: 350130
Number of successful extensions: 991
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 959
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 989
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)