Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0813
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    25   1.0  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          22   5.3  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   7.1  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    22   7.1  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                22   7.1  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   9.3  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -2

Query: 116 TSLDWAAIISGGTSMVAVLEFTRSSWF 36
           T+LDW  ++S G  +  +LEF    +F
Sbjct: 305 TALDWFLLMSFGYCIATLLEFAGVHYF 331


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +2

Query: 242 GSYPLSPTTTAGST 283
           G+Y L PTTTA  T
Sbjct: 374 GNYSLVPTTTASPT 387


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 582 FTNSQLDFGRFRDHFHAISI 523
           +T SQ  +G F  +F +ISI
Sbjct: 204 YTTSQQYYGHFAGNFSSISI 223


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +1

Query: 436 FITASGYLSARKIRSRFQTLVAQACDKCSY 525
           F   SGY S R+  + +      +C KC Y
Sbjct: 19  FDKCSGYPSIRQGTTSYCLGCGDSCHKCKY 48


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -3

Query: 535 RNLYTSTCHRPELPTFGSATVSCAPIGIPK 446
           +N+  S   +P+L  FGS+ +  AP  I K
Sbjct: 184 KNILMSKNGQPKLTDFGSSVLIGAPNEIDK 213


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +2

Query: 602 PRRSSAPACGRGPXHTGPFPAIPWPXSN 685
           P+R S P   +GP   GP P  P P  N
Sbjct: 34  PQRGSPPNPSQGPPPGGP-PGAP-PSQN 59


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,733
Number of Sequences: 438
Number of extensions: 4866
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)