Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0813
         (750 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g21830.1 68415.m02594 DC1 domain-containing protein contains ...    31   0.82 
At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein...    28   7.6  
At3g42060.1 68416.m04315 myosin heavy chain-related                    28   7.6  

>At2g21830.1 68415.m02594 DC1 domain-containing protein contains
           Pfam profilePF03107: DC1 domain
          Length = 569

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 11/42 (26%), Positives = 23/42 (54%)
 Frame = -1

Query: 390 QDGASWERAVVHEVQHSHLIEIDDDLELVGRDHFEAVEPAVV 265
           Q+     + +VH++ H+H++   D  EL G++H    E  ++
Sbjct: 375 QEDYETNKVMVHDINHNHVVTSIDMCELEGKEHCHICEKEIL 416


>At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein
           contains Pfam domain PF00098: Zinc knuckle
          Length = 831

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 19/69 (27%), Positives = 30/69 (43%)
 Frame = +1

Query: 361 DGSLPGCAVLKLSDGRKRSMSLWVEFITASGYLSARKIRSRFQTLVAQACDKCSYRDCVK 540
           DG +  C   + S G K   SLW+   ++ G    +K     +   A A D    RD  K
Sbjct: 477 DGKVSPCLTNRNS-GLK---SLWISRFSSKGSFPQKKASETAKEANASASDAAKTRDSRK 532

Query: 541 MIAETTEVK 567
           M+A+   ++
Sbjct: 533 MLADKNVIR 541


>At3g42060.1 68416.m04315 myosin heavy chain-related
          Length = 712

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/35 (42%), Positives = 16/35 (45%)
 Frame = -1

Query: 696 RPIILEXGQGIAGKGPVCXGPRPQAGALERRGYLH 592
           RPI    G+   G    C  PRP  GA ER G  H
Sbjct: 674 RPIWQSKGRCDRGSRDSCKRPRPLPGAAERWGRRH 708


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,123,487
Number of Sequences: 28952
Number of extensions: 331098
Number of successful extensions: 878
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 878
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)